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Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa

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Abstract

This is a continuity of a series of taxonomic papers where materials are examined, described and novel combinations are proposed where necessary to improve our traditional species concepts and provide updates on their classification. In addition to extensive morphological descriptions and appropriate asexual and sexual connections, DNA sequence data are also analysed from concatenated datasets (rDNA, TEF-α, RBP2 and β-Tubulin) to infer phylogenetic relationships and substantiate systematic position of taxa within appropriate ranks. Wherever new species or combinations are being proposed, we apply an integrative approach (morphological and molecular data as well as ecological features wherever applicable). Notes on 125 fungal taxa are compiled in this paper, including eight new genera, 101 new species, two new combinations, one neotype, four reference specimens, new host or distribution records for eight species and one alternative morphs. The new genera introduced in this paper are Alloarthopyrenia, Arundellina, Camarosporioides, Neomassaria, Neomassarina, Neotruncatella, Paracapsulospora and Pseudophaeosphaeria. The new species are Alfaria spartii, Alloarthopyrenia italica, Anthostomella ravenna, An. thailandica, Arthrinium paraphaeospermum, Arundellina typhae, Aspergillus koreanus, Asterina cynometrae, Bertiella ellipsoidea, Blastophorum aquaticum, Cainia globosa, Camarosporioides phragmitis, Ceramothyrium menglunense, Chaetosphaeronema achilleae, Chlamydotubeufia helicospora, Ciliochorella phanericola, Clavulinopsis aurantiaca, Colletotrichum insertae, Comoclathris italica, Coronophora myricoides, Cortinarius fulvescentoideus, Co. nymphatus, Co. pseudobulliardioides, Co. tenuifulvescens, Cunninghamella gigacellularis, Cyathus pyristriatus, Cytospora cotini, Dematiopleospora alliariae, De. cirsii, Diaporthe aseana, Di. garethjonesii, Distoseptispora multiseptata, Dis. tectonae, Dis. tectonigena, Dothiora buxi, Emericellopsis persica, Gloniopsis calami, Helicoma guttulatum, Helvella floriforma, H. oblongispora, Hermatomyces subiculosa, Juncaceicola italica, Lactarius dirkii, Lentithecium unicellulare, Le. voraginesporum, Leptosphaeria cirsii, Leptosphaeria irregularis, Leptospora galii, Le. thailandica, Lindgomyces pseudomadisonensis, Lophiotrema bambusae, Lo. fallopiae, Meliola citri-maximae, Minimelanolocus submersus, Montagnula cirsii, Mortierella fluviae, Muriphaeosphaeria ambrosiae, Neodidymelliopsis ranunculi, Neomassaria fabacearum, Neomassarina thailandica, Neomicrosphaeropsis cytisi, Neo. cytisinus, Neo. minima, Neopestalotiopsis cocoës, Neopestalotiopsis musae, Neoroussoella lenispora, Neotorula submersa, Neotruncatella endophytica, Nodulosphaeria italica, Occultibambusa aquatica, Oc. chiangraiensis, Ophiocordyceps hemisphaerica, Op. lacrimoidis, Paracapsulospora metroxyli, Pestalotiopsis sequoiae, Peziza fruticosa, Pleurotrema thailandica, Poaceicola arundinis, Polyporus mangshanensis, Pseudocoleophoma typhicola, Pseudodictyosporium thailandica, Pseudophaeosphaeria rubi, Purpureocillium sodanum, Ramariopsis atlantica, Rhodocybe griseoaurantia, Rh. indica, Rh. luteobrunnea, Russula indoalba, Ru. pseudoamoenicolor, Sporidesmium aquaticivaginatum, Sp. olivaceoconidium, Sp. pyriformatum, Stagonospora forlicesenensis, Stagonosporopsis centaureae, Terriera thailandica, Tremateia arundicola, Tr. guiyangensis, Trichomerium bambusae, Tubeufia hyalospora, Tu. roseohelicospora and Wojnowicia italica. New combinations are given for Hermatomyces mirum and Pallidocercospora thailandica. A neotype is proposed for Cortinarius fulvescens. Reference specimens are given for Aquaphila albicans, Leptospora rubella, Platychora ulmi and Meliola pseudosasae, while new host or distribution records are provided for Diaporthe eres, Di. siamensis, Di. foeniculina, Dothiorella iranica, Do. sarmentorum, Do. vidmadera, Helvella tinta and Vaginatispora fuckelii, with full taxonomic details. An asexual state is also reported for the first time in Neoacanthostigma septoconstrictum. This paper contributes to a more comprehensive update and improved identification of many ascomycetes and basiodiomycetes.

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Acknowledgements

K.D. Hyde would like to thank the Thailand Research Fund grant no RSA5980068 entitled Biodiversity, phylogeny and role of fungal endophytes on above parts of Rhizophora apiculata and Nypa fruticans and the Chinese Academy of Sciences, Project Number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. Financial support by the German Academic Exchange Service (DAAD) and the Thai Royal Golden Ph.D. Jubilee-Industry program (RGJ) for a joint TRF-DAAD PPP (2012–2014) academic exchange grant to K.D. Hyde and M. Stadler, and the RGJ for a personal grant to B. Thongbai (No. Ph.D/0138/2553 in 4.S.MF/53/A.3) is gratefully acknowledged. Chayanard Phukhamsakda (PHD/0020/2557) acknowledges the The Royal Golden Jubilee Ph.D. Program under the Thailand Research Fund. Mingkwan Doilom acknowledges the Royal Golden Jubilee Ph.D. Program (PHD./0072/2553 in 4.S.M.F./53/A.2) under the Thailand Research Fund. Ausana Mapook is grateful to Research and Researchers for Industries (RRI) PHD57I0012. Rungtiwa Phookamsak sincerely appreciates The Royal Golden Jubilee Ph. D. Program (PHD/0090/2551 in 4. S. MF/51/A.1) under the Thailand Research Fund for financial support. Qi Zhao thanks the National Natural Science Foundation of China (No. 31360015) and the CAS/SAFEA International Partnership Program for Creative Research Teams, and the Knowledge Innovation Program of the Chinese Academy of Sciences (No. KSCX2-EW-Z-9 and KIB2016002). KNAR acknowledges support from the University Grants Commission (UGC), India, in the form of a Rajiv Gandhi National Fellowship (Grant No. F. 14-2(SC)/2009 (SA-III)) and the permissions given to him for collecting agaric specimens from the forests of Kerala by the Principal Chief Conservator of Forests, Government of Kerala (WL12-4042/2009 dated 05-08-2009). This Project was funded by the National Plan for Science, Technology and Innovation (MAARIFAH), King Abdulaziz City for Science and Technology, Kingdom of Saudi Arabia, Award Number (12–BIO2840–02). B.K. Cui thanked for the finance by the Fundamental Research Funds for the Central Universities (No. 2016ZCQ04) and the National Natural Science Foundation of China (Project No. 31422001). We would like to thank Dr. Marcela E. S. Cáceres for translating the German description of Clavulinopsis, the Conselho Nacional de Desenvolvimento Científico (CNPq) for the master scholarship of LSAN, the Pós-Graduação em Biologia de Fungos (UFPE, Brazil), CNPq (Protax 562106/2010-3, Sisbiota 563342/2010-2, Universal 472792/2011-3) and FACEPE (APQ-0788-2.03/12) for financing this research. H.B. Lee was supported by the Graduate Program for the Undiscovered Taxa of Korea, and by the Project on Survey and Discovery of Indigenous Fungal Species of Korea, funded by NIBR and NNIBR of the Ministry of Environment (MOE), and in part by a fund from National Institute of Animal Science under Rural Development Administration, Republic of Korea. Aniket Ghosh, Priyanka Uniyal and R.P. Bhatt are grateful to the Head, Department of Botany & Microbiology, HNB Garhwal University, Srinagar Garhwal for providing all kinds of facilities during the present study. Kanad Das and Abhishek Baghela are thankful to the Director, Botanical Survey of India, Kolkata and Director, MACS’ Agharkar Research Institute, Pune respectively for providing facilities. UGC provided fellowship to Aniket Ghosh and Priyanka Unial. Field assistance rendered by Mr. Tahir Mehmood and Mr. Upendra Singh (HNBGU) are also duly acknowledged. Tuula Niskanen, Kare Liimatainen, Ilkka Kytövuori, Joe Ammirati, Bálint Dima, and Dimitar Bojantchev would like to acknowledge Heino Vänskä for the help with nomenclature. We are grateful to the curators of H and S. This work was partially supported by the Ministry of Environment, Finland (YM38/5512/2009) and Oskar Öflunds Stiftelse. The authors thanks Dr. Kerstin Voigt for the inestimable help in critical reviewing the lower fungi entries, the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco (FACEPE) for the postgraduate scholarships to Diogo X. Lima and Carlos A. F. de Souza, respectively. We also thank Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and FACEPE for financial support through the projects: ‘Mucoromycotina in upland forests from the semi-arid of Pernambuco’ (CNPq—458391/2014-0), and ‘Diversity of Mucoromycotina in different ecosystems of the Pernambuco’s Atlantic Rainforest’ (FACEPE—APQ 0842-2.12/14). Z.L Luo and H.Y Su would like to thank the National Natural Science Foundation of China (Project ID: 31460015) for financial support on Study of the distribution pattern and driving factors of aquatic fungal diversity in the region of Three Parallel Rivers. C. Phukhamsakda would like to thank Dr. Matthew P. Nelsen for his valuable suggestions. Saranyaphat Boonmee thanks to the Thailand Research Fund, project number TRG5880152 and Mae Fah Luang University for a Grant Number 2559A30702006”. C.G. Lin and Y. Wang thank for the finance by the National Natural Science Foundation of China (No. NSFC 31560489) and Fundamental Research on Science and Technology, Ministry of Science and Technology of China (2014FY120100). Haixia Wu would like to thank Dr. Shaun Pennycook for his kindly nomenclatural review and thanked for the finance by the National Natural Science Foundation of China (Project No. 31300019). S.C. Karunarathna, P.E. Mortimer and J.C. Xu would like to thank the World Agroforestry Centre, East and Central Asia Office; Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science; the Chinese; Ministry of Science and Technology, under the 12th 5-year National Key Technology Support Program (NKTSP)2013BAB07B06 integration and comprehensive demonstration of key technologies on Green Phosphate-mountaion Construction and the CGIAR Research Program 6: Forest, Trees and Agroforestry for partial funding. The National Research Council of Thailand (NRCT), projects—Taxonomy, phylogeny and cultivation of Lentinus species in northern Thailand (NRCT/55201020007) is also thanked. K. Tanaka and A. Hashimoto would like to thank the Japan Society for the Promotion of Science (JSPS; 26291084, 16K07474, 16J07243).

Author information

Authors and Affiliations

  1. Institute of Biotechnology and Germplasm Resources; Key Lab of Southwestern Crop Gene Resources and Germplasm Innovation Ministry of Agriculture; Yunnan Provincial Key Laboratory of Agricultural Biotechnology, Yunnan Academy of Agricultural Sciences, Kunming, 650223, Yunnan, People’s Republic of China

    Kevin D. Hyde, Qi Zhao, Zhong-Kai Zhang & Yong-Chang Zhao

  2. Key Laboratory of Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, People’s Republic of China

    Kevin D. Hyde, Qi Zhao, Monika C. Dayarathne, Nimali I. de Silva, Anusha H. Ekanayaka, Shi-Ke Huang, Chayanard Phukhamsakda, Indunil C. Senanayake, T. M. D. S. Tennakoon, Qing Tian, Dhanushka N. Wanasinghe, Samantha C. Karunarathna, Peter E. Mortimer & Jian-Chu Xu

  3. Center of Excellence in Fungal Research, Mae Fah Luang University, 333 M. 1, T. Thasud, Muang, Chiang Rai, 57100, Thailand

    Kevin D. Hyde, Sinang Hongsanan, Saranyaphat Boonmee, Supharat Banmai, Dinushani A. Daranagama, Monika C. Dayarathne, Nimali I. de Silva, Asha J. Dissanayake, Mingkwan Doilom, Anusha H. Ekanayaka, Shi-Ke Huang, Subashini C. Jayasiri, Ruvishika S. Jayawardena, Sirinapa Konta, Wen-Jing Li, Chuan-Gen Lin, Jian-Kui Liu, Yong-Zhong Lu, Zong-Long Luo, Ishara S. Manawasinghe, Ausana Mapook, Chada Norphanphoun, Rekhani H. Perera, Chayanard Phukhamsakda, Indunil C. Senanayake, T. M. D. S. Tennakoon, Kasun M. Thambugala, Qing Tian, Saowaluck Tibpromma, Benjarong Thongbai, Dhanushka N. Wanasinghe, Nalin N. Wijayawardene, Jing Yang, Xiang-Yu Zeng, Sutakorn Kamolhan, Samantha C. Karunarathna & Narumon Tangthirasunun

  4. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st West Beichen Road, Chaoyang District, Beijing, 100101, People’s Republic of China

    Dinushani A. Daranagama & Xing-Zhong Liu

  5. Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box: 2455, Riyadh, 1145, Saudi Arabia

    E. B. Gareth Jones, Mohamed A. Abdel-Wahab & Ali H. Bahkali

  6. Department of Botany and Microbiology, Faculty of Science, Sohag University, Sohag, 82524, Egypt

    Faten Awad Abdel-Aziz & Mohamed A. Abdel-Wahab

  7. Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan

    Kazuaki Tanaka, Akira Hashimoto & Takumasa Takahashi

  8. The United Graduate School of Agricultural Sciences, Iwate University, 18-8 Ueda 3 Chome, Morioka, 020-8550, Japan

    Kazuaki Tanaka & Akira Hashimoto

  9. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province, 550006, People’s Republic of China

    Hiran A. Ariyawansa, Jian-Kui Liu, Rekhani H. Perera, Kasun M. Thambugala, Jin-Feng Zhang & Zuo-Yi Liu

  10. School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand

    Putarak Chomnunti, Zong-Long Luo & Qing Tian

  11. Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, 550025, Guizhou, People’s Republic of China

    Chuan-Gen Lin & Yong Wang

  12. Department of Botany, Goa University, Taleigão, Goa, India

    D. Jayarama Bhat

  13. No. 128/1–J, Azad Housing Society, Curca, Goa Velha, 403108, India

    D. Jayarama Bhat

  14. Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand

    Nimali I. de Silva, Itthayakorn Promputtha & Saisamorn Lumyong

  15. World Agroforestry Centre, East and Central Asia, Kunming, 650201, Yunnan, People’s Republic of China

    Rungtiwa Phookamsak, Nimali I. de Silva, Anusha H. Ekanayaka, Indunil C. Senanayake, T. M. D. S. Tennakoon, Qing Tian, Saowaluck Tibpromma, Samantha C. Karunarathna, Peter E. Mortimer & Jian-Chu Xu

  16. Centre of Mountain Ecosystem Studies, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, People’s Republic of China

    Qing Tian, Samantha C. Karunarathna, Peter E. Mortimer & Jian-Chu Xu

  17. Department of Microbial Drugs, Helmholtz Centre for Infection Research, Brunswick, Germany

    Christian Richter & Marc Stadler

  18. German Centre for Infection Research (DZIF), Partner Site Hannover/Braunschweig, Inhoffenstrasse 7, 38124, Brunswick, Germany

    Christian Richter & Marc Stadler

  19. Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, 344090, Rostov Region, Russia

    Timur S. Bulgakov

  20. Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand

    Eric H. C. McKenzie

  21. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy

    Erio Camporesi

  22. Circolo Micologico “Giovanni Carini”, C.P. 314, Brescia, Italy

    Erio Camporesi

  23. Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo, RA, Italy

    Erio Camporesi

  24. Department of Botany & Microbiology, H.N.B. Garhwal University, Srinagar, Garhwal, Uttarakhand, 246174, India

    R. P. Bhatt, Aniket Ghosh & Priyanka Uniyal

  25. Muséum National d’Histoire Naturelle, Département Systématique et Evolution, CP 39, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, 12 Rue Buffon, 75005, Paris, France

    Bart Buyck

  26. Cryptogamic Unit, Botanical Survey of India, P.O. Botanic Garden, Howrah, 711103, India

    Kanad Das

  27. National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS - Agharkar Research Institute, G.G. Agarkar Road, Pune, 411004, India

    Abhishek Baghela

  28. Institute of Edible Fungi, Yunnan Agricultural University, Kunming, 650201, Yunnan, People’s Republic of China

    Qi Zhao

  29. Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, 550025, Guizhou Province, People’s Republic of China

    Subashini C. Jayasiri, Yong-Zhong Lu, Xiang-Yu Zeng, Ji-Chuan Kang & Ting-Chi Wen

  30. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People’s Republic of China

    Asha J. Dissanayake, Ruvishika S. Jayawardena & Ishara S. Manawasinghe

  31. College of Agriculture & Biological Sciences, Dali University, Dali, 671003, Yunnan, People’s Republic of China

    Zong-Long Luo & Hong-Yan Su

  32. Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai, 50150, Thailand

    Sinang Hongsanan, Saowaluck Tibpromma & Samantha C. Karunarathna

  33. Yunnan Institute of Food Safety, Kunming University of Science & Technology, Kunming, 650500, Yunnan, People’s Republic of China

    Huang Zhang

  34. Botanic Garden and Botanical Museum, Königin-Luise-Strasse 6-8, 14195, Berlin, Germany

    Robert Lücking

  35. Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, 10125, Turin, Italy

    Alfredo Vizzini & Enrico Ercole

  36. Via Novaluce 38, 95125, Tremestieri Etneo, Catania, Italy

    Angela Lantieri

  37. Via Giuseppe Mazzini 21, 25086, Rezzato, Brescia, Italy

    Gianfranco Medardi

  38. Institute of Microbiology, Beijing Forestry University, Beijing, 100083, People’s Republic of China

    Bao-Kai Cui, Yu-Cheng Dai, Jun-Liang Zhou & Lin Zhu

  39. Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 61186, Republic of Korea

    Hyang Burm Lee, Tham Thi Duong & Thi Thuong Thuong Nguyen

  40. Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Recife, PE, 50670-420, Brazil

    André L. C. M. de A. Santiago, Catarina Letícia Ferreira de Lima, Rafael José Vilela de Oliveira & Carlos Alberto Fragoso de Souza

  41. Departamento de Biologia Campus Universitário, Universidade Estadual de Maringá, Av. Colombo 5790, Jardim Universitario, Maringá, PR, CEP 87020-900, Brazil

    Mateus A. Reck

  42. Micolab, Programa de Pós-Graduação em Biologia de Fungos, Algas e Plantas, Departamento de Botânica, Universidade Federal de Santa Catarina, Campus Universitário Trindade, Florianópolis, SC, CEP: 88040-900, Brazil

    E. Ricardo Drechsler-Santos & Fernando Mafalda-Freire

  43. International Fungal Research and Development Centre, Key Laboratory of Resource Insect Cultivation & Utilization State Forestry Administration, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, 650224, People’s Republic of China

    Hai-Xia Wu

  44. Botanical Museum, University of Helsinki, P.O. Box 7, 00014, Helsinki, Finland

    Ilkka Kytövuori

  45. Department of Biosciences, Plant Biology, University of Helsinki, P.O. Box 65, 00014, Helsinki, Finland

    Bálint Dima & Kare Liimatainen

  46. Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117, Budapest, Hungary

    Bálint Dima

  47. MushroomHobby.com, 345 Shipwatch Lane, Hercules, CA, 94547, USA

    Dimitar Bojantchev

  48. Department of Biology, University of Washington, Box 351800, Seattle, WA, 98195-1800, USA

    Joseph F. Ammirati

  49. Jodrell Laboratory, Royal Botanic Gardens, Kew, TW9 3AB, UK

    Tuula Niskanen & Kare Liimatainen

  50. Laboratório de Biologia Molecular e Computacional de Fungos (LBMCF), Departamento de Microbiologia, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, MG, CEP: 31270-901, Brazil

    Aristóteles Góes-Neto

  51. Microorganisms Bank, Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR), Tehran, Iran

    Moslem Papizadeh & Seyed Abolhassan Shahzadeh-Fazeli

  52. National Laboratory of Industrial Microbiology, Department of Microbiology, Faculty of Biological Sciences, Alzahra University, Tehran, Iran

    Mohammad Reza Soudi

  53. Department of Molecular and Cellular Biology, Faculty of Basic Sciences and Advanced Technologies in Biology, University of Science and Culture, Tehran, Iran

    Seyed Abolhassan Shahzadeh-Fazeli

  54. Extremophiles Laboratory, Department of Microbiology, Faculty of Biology and Center of Excellence in Phylogeny of Living Organisms, College of Science, University of Tehran, Tehran, Iran

    Mohammad A. Amoozegar

  55. Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius

    Rajesh Jeewon

  56. Departamento de Micologia Avenida da Engenharia, Centro de Ciências Biológicas (CCB), Universidade Federal de Pernambuco (UFPE), S/N - Cidade Universitária, Recife, PE, 50740-600, Brazil

    Tatiana Baptista Gibertoni, Lidia Silva Araujo-Neta & Gladstone Alves da Silva

  57. Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK

    Paul M. Kirk

  58. Department of Botany, University of Calicut, Malappuram, Kerala, 673 635, India

    Patinjareveettil Manimohan & K. N. Anil Raj

  59. Laboratoire Interdisciplinaire des Energies de Demain, Université Paris Diderot, 35, Rue Hélène Brion, 75205, Paris, France

    Narumon Tangthirasunun

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Correspondence to Qi Zhao.

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Hyde, K.D., Hongsanan, S., Jeewon, R. et al. Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 80, 1–270 (2016). https://doi.org/10.1007/s13225-016-0373-x

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