Skip to main content
Log in

Streptosporangium anatoliense sp. nov., isolated from soil in Turkey

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

A novel actinobacterium, strain N9999T, was isolated from soil and its taxonomic position determined using a polyphasic approach. The organism formed abundant aerial hyphae that differentiated into spherical spore vesicles. The cell wall contained meso-diaminopimelic acid; the whole-cell sugars were galactose, glucose, mannose, madurose and ribose; the predominant menaquinones MK-9 (H2) and MK-9 (H4); the major phospholipids phosphatidylethanolamine, diphosphatidylglycerol, a phosphaglycolipid and phosphatidylinositol mannosides; while the cellular fatty acids were rich in iso-C14:0, C15:0, cis-9-C17:1, iso-C16:0 and 10-methyl C17:0 components. Phylogenetic analyses based on an almost complete 16S rRNA gene sequence indicated that strain N9999T was closely related to a group that consisted of Streptosporangium pseudovulgare DSM 43181T and Streptosporangium nondiastaticum DSM 43848T. However, DNA–DNA relatedness and phenotypic data demonstrated that strain N9999T was clearly distinguished from all closely related Streptosporangium species. The combined genotypic and phenotypic data demonstrate conclusively that the isolate should be classified as a new species of Streptosporangium.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Cashion P, Holder-Franklin MA, McCully J, Franklin M (1977) A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466

    Article  PubMed  CAS  Google Scholar 

  • Chun J, Goodfellow M (1995) A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45:240–245

    Article  PubMed  CAS  Google Scholar 

  • Chun J, Lee J-H, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261

    Article  PubMed  CAS  Google Scholar 

  • Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230

    Article  PubMed  CAS  Google Scholar 

  • De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:143–153

    Article  PubMed  Google Scholar 

  • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  PubMed  CAS  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogeny: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416

    Article  Google Scholar 

  • Gonzalez JM, Saiz-Jimenez C (2005) A simple fluorimetric method for the estimation of DNA–DNA relatedness between closely related microorganisms by thermal denaturation temperatures. Extremophiles 9:75–79

    Article  PubMed  CAS  Google Scholar 

  • Goodfellow M, Quintana ET (2012) Family 1. Streptosporangiaceae Goodfellow, Stanton, Simpson and Minnikin 1990a 321VP. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo M, Suzuki KE, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, 2nd edn, vol 5. Springer, New York (in press)

  • Goodfellow M, Alderson G, Lacey J (1979) Numerical taxonomy of Actinomadura and related actinomycetes. J Gen Microbiol 112:95–111

    Article  PubMed  CAS  Google Scholar 

  • Gordon RE, Mihm JM (1962) Identification of Nocardia caviae. (Erikson) nov. comb. Ann N Y Acad Soc 98:628–636

    Article  Google Scholar 

  • Hayakawa M, Nonomura H (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65:501–509

    Article  CAS  Google Scholar 

  • Hayakawa M, Tamura T, Iino H, Nonomura H (1991) New methods for the highly selective isolation of Streptosporangium and Dactylosporangium from soil. J Ferment Bioeng 72:327–333

    Article  CAS  Google Scholar 

  • Hsu SC, Lockwood JL (1975) Powdered chitin agar as a selective medium for enumeration of actinomycetes in water and soil. Appl Microbiol 29:422–426

    PubMed  CAS  Google Scholar 

  • Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrometric determination of DNA hybridisation from renaturation rates. Syst Appl Microbiol 4:184–192

    Article  CAS  Google Scholar 

  • Inahashi Y, Matsumoto A, Ōmura S, Takahashi Y (2011) Streptomyces oxazolinicum sp. nov., a novel endophytic actinomycete producing new antitrypanosomal antibiotics, spoxazomicins. J Antibiot (Tokyo) 64:297–302

    Article  CAS  Google Scholar 

  • Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141–145

    Google Scholar 

  • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol. 3. Academic Press, New York, pp 21–132

  • Kämpfer P, Kroppenstedt RM (1996) Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005

    Article  Google Scholar 

  • Kelly KL (1964) Inter-Society Color Council-National Bureau of standards color-name charts illustrated with centroid colors. US Government Printing Office, Washington, DC

    Google Scholar 

  • Kroppenstedt RM, Goodfellow M (2006) The family Thermomonosporaceae: Actinocorallia, Actinomadura, Spirillispora and Thermomonospora. In: Dworkin M, Falkow S, Schleifer KH, Stackebrandt E (eds) The prokaryotes, archaea and bacteria: firmicutes, actinomycetes, 3rd edn, vol 3. , Springer, New York, pp 682–724

  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:294–2947

    Article  Google Scholar 

  • Lazzarini A, Cavaletti L, Toppo G, Marinelli F (2000) Rare genera of actinomycetes as potential producers of new antibiotics. Antonie Van Leeuwenhoek 78:399–405

    Article  PubMed  CAS  Google Scholar 

  • Lechevalier MP, Lechevalier HA (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435–443

    Article  CAS  Google Scholar 

  • Lechevalier MP, De Bievre C, Lechevalier HA (1977) Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:26–249

    Article  Google Scholar 

  • Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241

    Article  CAS  Google Scholar 

  • Nash P, Krent MM (1991) Culture media. In: Balows A, Hauser WJ, Herrmann KL, Isenberg HD, Shadomy HJ (eds) Manual of clinical microbiology, 5th edn. American Society for Microbiology, Washington DC, pp 1268–1270

  • Nonomura H, Okara Y (1960) Distribution of actinomycetes in soil. V. The isolation and classification of the genus Streptosporanium. J Ferment Technol 38:405–409

    Google Scholar 

  • O’Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E (1993) Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie Van Leeuwenhoek 64:325–340

    Article  PubMed  Google Scholar 

  • Quintana ET, Goodfellow M (2012) Genus 1. Streptosporanium Couch 1995a, 145AL emend. Stackebrandt Kroppenstedt, Janke, Kemmering and Gűrtler 1994, 268. In: Goodfellow M, Kämpfer P, Busse MJ, Trujillo M, Suzuki KE, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, 2nd edn, vol 5. Springer, New York (in press)

  • Saitou N, Nei M (1987) The neighbor-joining method. A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technol Note 101. MIDI Inc., Newark

  • Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340

    Article  Google Scholar 

  • Staneck JL, Roberts CD (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231

    PubMed  CAS  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Bio Evol 28:273–2731

    Article  Google Scholar 

  • Wang Y, Zhang ZS, Ruan TS, Ali SM (1999) Investigation of actinomycete diversity in the tropical rainforests of Singapore. J Ind Microbiol Biotechnol 23:178–187

    Article  CAS  Google Scholar 

  • Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE (1987) International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464

    Article  Google Scholar 

  • Weyland H (1969) Actinomycetes in North Sea and Atlantic Ocean sediments. Nature 223:858

    Article  PubMed  CAS  Google Scholar 

  • Whitham TS, Athalye M, Minnikin DE, Goodfellow M (1993) Numerical and chemical classification of Streptosporangium and some related actinomycetes. Antonie Van Leeuwenhoek 64:387–429

    Article  PubMed  Google Scholar 

  • Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743–1813

    PubMed  CAS  Google Scholar 

  • Zhang L-P, Zhang L-M, Zhang X-M (2009) Streptosporangium canum sp. nov., isolated from soil. Int J Syst Evol Microbiol 59:1715–1719

    Google Scholar 

  • Zhang Y-Q, Liu H-Y, Yu L-Y, Lee J-C, Park D-J, Kim C-J, Xu L-H, Jiang C-L, Li W-J (2011) Sinosporangium album gen. nov., sp. nov., a new member of the suborder Streptosporangineae. Int J Syst Evol Microbiol 61:592–597

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This research was supported by Ondokuz Mayis University (OMU), project no. PYO. FEN. 1901.09.003. The authors’ thank Professor Jean Paul Marie Euzéby for his help with the nomenclature.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nevzat Sahin.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material (PDF 31 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sazak, A., Sahin, N., Camas, M. et al. Streptosporangium anatoliense sp. nov., isolated from soil in Turkey. Antonie van Leeuwenhoek 102, 269–276 (2012). https://doi.org/10.1007/s10482-012-9735-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-012-9735-x

Keywords

Navigation