Skip to main content
Log in

The novel, major locus Rpi-phu1 for late blight resistance maps to potato chromosome IX and is not correlated with long vegetation period

  • Original Paper
  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

Despite the long history of breeding potatoes resistant to Phytophthora infestans, this oomycete is still economically the most important pathogen of potato worldwide. The correlation of high levels of resistance to late blight with a long vegetation period is one of the bottlenecks for progress in breeding resistant cultivars of various maturity types. Solanum phureja was identified as a source of effective late blight resistance, which was transferred to the cultivated gene pool by interspecific crosses with dihaploids of Solanum tuberosum. A novel major resistance locus, Rpi-phu1, derived most likely from S. phureja and conferring broad-spectrum resistance to late blight, was mapped to potato chromosome IX, 6.4 cM proximal to the marker GP94. Rpi-phu1 was highly effective in detached leaflet, tuber slice and whole tuber tests during 5 years of quantitative phenotypic assessment. The resistance did not show significant correlation with vegetation period length. Our findings provide a well-characterized new source of resistance for breeding early and resistant-to-P. infestans potatoes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Allefs JJHM, Muskens MWM, van der Vossen EAG (2005) Breeding for foliage blight resistance in the genomics era. In: Haverkort AJ, Striuk PC (eds) Potato in progress. Science meets practice. Academic, Wageningen, pp. 255–267

  • Ballvora A, Ercolano MR, Weiss J, Meksem K, Bormann CA, Oberhagemann P, Salamini F, Gebhardt C (2002) The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. Plant J 30:361–371

    Article  PubMed  CAS  Google Scholar 

  • Bormann CA, Rickert AM, Castillo Ruiz RA, Paal J, Lübeck J, Strahwald J, Buhr K, Gebhardt C (2004) Tagging quantitative trait loci for maturity-corrected late blight resistance in tetraploid potato with PCR-based candidate gene markers. Mol Plant Microbe Interact 17:1126–1138

    Article  PubMed  CAS  Google Scholar 

  • Bradshaw JE, Pande B, Bryan GJ, Hackett CA, McLean K, Stewart HE, Waugh R (2004) Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum). Genetics 168:983–995

    Article  PubMed  CAS  Google Scholar 

  • Bradshaw JE, Bryan GJ, Lees AK, McLean K, Solomon-Blackburn RM (2006) Mapping the R10 and R11 genes for resistance to late blight (Phytophthora infestans) present in the potato (Solanum tuberosum) R-gene differentials of Black. Theor Appl Genet 112:744–751

    Article  PubMed  CAS  Google Scholar 

  • Brommonschenkel SH, Tanksley SD (1997) Map-based cloning of the tomato genomic region that spans the Sw-5 tospovirus resistance gene in tomato. Mol Gen Genet 256:121–126

    Article  PubMed  CAS  Google Scholar 

  • Chagué V, Mercier JC, Guénard M, de Courcel A, Vedel F (1996) Identification and mapping on chromosome 9 of RAPD markers linked to Sw-5 in tomato by bulked segregant analysis. Theor Appl Genet 92:1045–1051

    Article  Google Scholar 

  • Chunwongse J, Chunwongse C, Black L, Hanson P (2002) Molecular mapping of the Ph-3 gene for late blight resistance in tomato. J Hortic Sci Biotechnol 77:281–286

    CAS  Google Scholar 

  • Collins A, Milbourne D, Ramsay L, Meyer R, Chatot-Balandras C, Oberhagemann P, De Jong W, Gebhardt C, Bonnel E, Waugh R (1999) QTL for field resistance to late blight in potato are strongly correlated with maturity and vigour. Mol Breed 5:387–398

    Article  CAS  Google Scholar 

  • El-Kharbotly A, Leonards-Schippers C, Huigen DJ, Jacobsen E, Pereira A, Stiekema WJ, Salamini F, Gebhardt C (1994) Segregation analysis and RLFP mapping of the R1 and R3 alleles conferring race-specific resistance to Phytophthora infestans in progeny of dihaploid potato parents. Mol Gen Genet 242:749–754

    Article  PubMed  CAS  Google Scholar 

  • El-Kharbotly A, Palomino-Sánchez C, Salamini F, Jacobsen E, Gebhardt C (1996) R6 and R7 alleles of potato conferring race-specific resistance to Phytophthora infestans (Mont.) de Bary identified genetic loci clustering with the R3 locus on chromosome XI. Theor Appl Genet 92:880–884

    Article  CAS  Google Scholar 

  • Ewing EE, Simko I, Smart CD, Bonierbale MW, Mizubuti ESG, May GD, Fry WE (2000) Genetic mapping from field tests of qualitative and quantitative resistance to Phytophthora infestans in a population derived from Solanum tuberosum and Solanum berthaultii. Mol Breed 6:25–36

    Article  CAS  Google Scholar 

  • Flier WG, Turkensteen LJ, van den Bosch GMB, Verijken PFG, Mulder A (2001) Differential interaction of potato cultivars with different levels of blight resistance. Plant Pathol 50:292–301

    Article  Google Scholar 

  • Flis B, Hennig J, Strzelczyk-Żyta D, Gebhardt C, Marczewski W (2005) The Ry-fsto gene from Solanum stoloniferum for extreme resistant to Potato virus Y maps to potato chromosome XII and is diagnosed by PCR marker GP122718 in PVY resistant potato cultivars. Mol Breed 15:95–101

    Article  CAS  Google Scholar 

  • Gebhardt C (2004) Potato genetics: maps and more. In: Lörtz H, Wenzel G (eds) Molecular marker systems in plant breeding and crop improvement. Biotechnology in agriculture and forestry. Springer, Berlin Heidelberg New York, pp. 55:215–227

  • Gebhardt C, Valkonen JPT (2001) Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 39:79–102

    Article  PubMed  CAS  Google Scholar 

  • Gebhardt C, Walkemeier B, Henselewski H, Barakat A, Delseny M, Stüber K (2003) Comparative mapping between potatoes (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J 34:529–541

    Article  PubMed  CAS  Google Scholar 

  • Huang S (2005) Discovery and characterization of the major late blight resistance complex in potato. Thesis, Wageningen University

  • Huang S, Vleeshouwers VGAA, Werij JS, Hutten RCB, van Eck HJ, Visser RGF, Jacobsen E (2004) The R3 resistance to Phytophthora infestans in potato is conferred by two closely linked R genes with distinct specificities. Mol Plant Microbe Interact 17:428–435

    Article  PubMed  CAS  Google Scholar 

  • Huang S, van der Vossen EAG, Kuang H, Vleeshouwers VGAA, Zhang N, Borm JA, van Eck HJ, Baker B, Jacobsen E, Visser RGF (2005) Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. Plant J 42:251–261

    Article  PubMed  CAS  Google Scholar 

  • Kawchuk LM, Hachey J, Lynch DR, Kulcsar F, van Rooijen G, Waterer DR, Robertson A, Kokko E, Byers R, Howerd HR, Fischer R, Prüfer D (2001) Tomato Ve disease-resistance genes encode cell surface-like receptors. Proc Natl Acad Sci USA 98:6511–6515

    Article  PubMed  CAS  Google Scholar 

  • Kuhl JC, Hanneman RE Jr, Havey MJ (2001) Characterization and mapping of Rpi1, a late-blight resistance locus from diploid (1EBN) Mexican Solanum pinnatisectum. Mol Genet Genomics 265:977–985

    Article  PubMed  CAS  Google Scholar 

  • Leonards-Schippers C, Gieffers W, Salamini F, Gebhardt C (1992) The R1 gene conferring race-specific resistance to Phytophthora infestans in potato is located on potato chromosome V. Mol Gen Genet 233:278–283

    Article  Google Scholar 

  • Li X, van Eck HJ, Rouppe van der Voort JNAM, Huigen DJ, Stam P, Jacobsen E (1998) Autotetraploids and genetic mapping using common AFLP markers: the R2 allele conferring resistance to Phytophthora infestans mapped on potato chromosome 4. Theor Appl Genet 96:1121–1128

    Article  CAS  Google Scholar 

  • Malcolmson JF (1969) Races of Phytophthora infestans occurring in Great Britain. Trans Br Mycol Soc 53:417–423

    Article  Google Scholar 

  • Marczewski W, Ostrowska K, Zimnoch-Guzowska E (1998) Identification of RAPD markers linked to the Ns locus in potato. Plant Breed 117:88–90

    Article  CAS  Google Scholar 

  • Marczewski W, Strzelczyk-Żyta D, Hennig J, Witek K, Gebhardt C (2006) Potato chromosomes IX and XI carry genes for resistance to potato virus M. Theor Appl Genet 112:1232–1238

    Article  PubMed  CAS  Google Scholar 

  • McNally KL, Mutschler MA (1997) Use of introgression lines and zonal mapping to identify RAPD markers linked to QTL. Mol Breed 3:203–212

    Article  CAS  Google Scholar 

  • Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genetic regions using segregating populations. Proc Natl Acad Sci USA 88:9828–9832

    Article  PubMed  CAS  Google Scholar 

  • Millett BP, Bradeen JM (2005) Does the foliar resistance R gene RB function for tuber blight control? In: Abstracts of plant and animal genomes XIII conference, San Diego, 15–19 January 2005, 486 pp

  • Naess SK, Bradeen JM, Wielgus SM, Haberlach GT, McGrath JM, Helgeson JP (2000) Resistance to late blight in Solanum bulbocastanum is mapped to chromosome 8. Theor Appl Genet 101:697–704

    Article  CAS  Google Scholar 

  • Niederhauser JS, Cervantes J, Servin L (1954) Late blight in Mexico and its implications. Phytopathology 44:406–408

    Google Scholar 

  • Oberhagemann P, Chatot-Balandras C, Schäfer-Pregl R, Wegener D, Palomino C, Salamini F, Bonnel E, Gebhardt C (1999) A genetic analysis of quantitative resistance to late blight in potato: towards marker-assisted selection. Mol Breed 5:399–415

    Article  CAS  Google Scholar 

  • Ortiz R, Peloquin SJ (1994) Use of 24-chromosome potatoes (diploids and dihaploids) for genetical analysis. In: Bradshaw JE, Mackay GR (eds) Potato genetics. CAB International, Wallinford, pp. 133–154

    Google Scholar 

  • Park T-H, Gros J, Sikkema A, Vleeshouwers VGAA, Muskens M, Allefs S, Jacobsen E, Visser RGF, van der Vossen EAG (2005a) The late blight resistance locus Rpi-blb3 from Solanum bulbocastanum belongs to a major late blight R gene cluster on chromosome 4 of potato. Mol Plant Microbe Interact 18:722–729

    Article  CAS  Google Scholar 

  • Park T-H, Vleeshouwers VGAA, Hutten RCB, van Eck HJ, van der Vossen EAG, Jacobsen E, Visser RGF (2005b) High-resolution mapping and analysis of the resistance locus Rpi-abpt against Phytophthora infestans in potato. Mol Breed 16:33–43

    Article  CAS  Google Scholar 

  • Park T-H, Vleeshouwers VGAA, Kim J-B, Hutten RCB, Visser RGF (2005c) Dissection of foliage and tuber blight resistance in mapping populations of potato. Euphytica 143:75–83

    Article  Google Scholar 

  • Plomion C, Hurme P, Frigerio J-M, Ridolfi M, Pot D, Pionneau C, Avila C, Gallardo F, David H, Neutelings G, Campbell M, Canovas FM, Savolainen O, Bodénès C, Kremer A (1999) Developing SSCP markers in two Pinus species. Mol Breed 5:21–31

    Article  CAS  Google Scholar 

  • Ratuszniak E, Komorowska-Jędrys J (1995) Metodyka prowadzenia badań i obserwacji w doświadczeniach wstępnych z rodami hodowlanymi (odmianami) ziemniaka (instrukcja). Instytut Ziemniaka, Bonin

    Google Scholar 

  • Rauscher GM, Smart CD, Simko I, Bonierbale M, Mayton H, Greenland A, Fry WE (2006) Characterization and mapping of R pi-ber , a novel potato late blight resistance gene from Solanum berthaultii. Theor Appl Genet 112:674–687

    Article  PubMed  CAS  Google Scholar 

  • Rickert AM, Kim JH, Meyer S, Nagel A, Ballvora A, Oefner PJ, Gebhardt C (2003) First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome. Plant Biotechnol J 1:399–410

    Article  PubMed  CAS  Google Scholar 

  • Roer L, Toxopeus HJ (1961) The effect of R-genes for hypersensitivity in potato-leaves on tuber resistance to Phytophthora infestans. Euphytica 10:35–42

    Article  Google Scholar 

  • Rouppe van der Voort J, van der Vossen E, Bakker E, Overmars H, van Zandvoort P, Hutten R, Klein-Lankhorst R, Bakker J (2000) Two additive QTLs conferring broad-spectrum resistance in potato to Globodera pallida are localized on resistance gene clusters. Theor Appl Genet 101:1122–1130

    Article  Google Scholar 

  • Rudkiewicz F (1985) Zaraza ziemniaka (Phytophthora infestans (Mont) de Bary). In: Gabriel W (ed) Biologia ziemniaka Państwowe Wydawnictwa Naukowe. Warsaw, Poland, pp. 381–398

    Google Scholar 

  • Simko I, Constanzo S, Haynes KG, Christ BJ, Jones RW (2004) Linkage disequilibrium mapping of a Verticilium dahliae resistance quantitative trait locus in tetraploid potato (Solanum tuberosum) through a candidate gene approach. Theor Appl Genet 108:217–224

    Article  PubMed  CAS  Google Scholar 

  • Slabaugh MB, Huestis GM, Leonard J, Holloway JL, Rosato C, Hongtrakul V, Martini N, Toepfer R, Voetz M, Schell J, Knapp SJ (1997) Sequence-based genetic markers for genes and gene families: single-strand conformational polymorphisms for the fatty acid synthesis genes of Cuphea. Theor Appl Genet 94:400–408

    Article  CAS  Google Scholar 

  • Smilde WD, Brigneti G, Jagger L, Perkins S, Jones JDG (2005) Solanum mochiquense chromosome IX carries a novel late blight resistance gene Rpi-moc1. Theor Appl Genet 110:252–258

    Article  PubMed  CAS  Google Scholar 

  • Song J, Bradeen JM, Naess SK, Raasch JA, Wielgus SM, Haberlach GT, Liu J, Kuang H, Austin-Philips S, Buell CR, Helgeson JP, Jiang J (2003) Gene RB cloned from Solanum bulbocastanum confers road spectrum resistance to potato late blight. Proc Natl Acad Sci USA 100:9128–9133

    Article  PubMed  CAS  Google Scholar 

  • Stewart HE, Bradshaw JE (2001) Assessment of the field resistance of potato genotypes with major gene resistance to late blight (Phytophthora infestans (Mont.) de Bary) using inoculum comprised of two complementary races of the fungus. Potato Res 44:41–51

    Article  Google Scholar 

  • Świeżyński KM (1990) Resistance to Phytophthora infestans in potato cultivars and its relation to maturity. Genetica Pol 31:99–106

    Google Scholar 

  • Świeżyński KM, Zimnoch-Guzowska E (2001) Breeding potato cultivars with tubers resistant to Phytophthora infestans. Potato Res 44:97–117

    Article  Google Scholar 

  • Tanksley SD, Ganal MW, Prince JP, de Vincente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Röder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141–1160

    PubMed  CAS  Google Scholar 

  • Tommiska TJ, Hämäläinen JH, Watanabe KN, Valkonen JPT (1998) Mapping of the gene Nx phu that controls hypersensitive resistance to potato virus X in Solanum phureja IvP35. Theor Appl Genet 96:840–843

    Article  CAS  Google Scholar 

  • Toxopeus HJ (1958) Some notes of the relations between field resistance to Phytophthora infestans in leaves and tubers and ripening time in Solanum tuberosum subsp. tuberosum. Euphytica 7:123–130

    Article  Google Scholar 

  • Toxopeus HJ (1961) On the inheritance of tuber resistance of Solanum tuberosum to Phytophthora infestans in the field. Euphytica 10:307–314

    Article  Google Scholar 

  • Umaerus V, Umaerus M (1994) Inheritance of resistance to late blight. In: Bradshaw JE, Mackay GR (eds) Potato genetics. CAB International, Wallinford, pp. 319–337

    Google Scholar 

  • Van der Vossen E, Sikkema A, te Lintel Hekkert B, Gros J, Stevens P, Muskens M, Wouters D, Pereira A, Stiekema W, Allefs S (2003) An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J 36:867–882

    Article  PubMed  CAS  Google Scholar 

  • Van der Vossen E, Gros JE, Sikkema A, Muskens M, Wouters D, Wolters P, Pereira A, Allefs S (2005) The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato. Plant J 44:208–222

    Article  PubMed  CAS  Google Scholar 

  • Visker MHPW, Keizer LCP, van Eck HJ, Jacobsen E, Colon LT, Struik PC (2003) Can the QTL for late blight resistance on potato chromosome 5 be attributed to foliage maturity type? Theor Appl Genet 106:317–325

    PubMed  CAS  Google Scholar 

  • Visker MHPW, Heilersig HJB, Kodde LP, Van de Weg WE, Voorrips RE, Struik PC, Colon LT (2005) Genetic linkage of QTLs for late blight resistance and foliage maturity type in six related potato progenies. Euphytica 143:189–199

    Article  CAS  Google Scholar 

  • Wastie RL (1991) Breeding for resistance. Adv Plant Pathol 7:193–223

    Google Scholar 

  • Zarzycka H (2001a) Evaluation of resistance to Phytophthora infestans in detached leaflet assay. Preparation of the inoculum. Plant Breeding and Acclimatization Institute, Radzików, Poland. IHAR Monografie i Rozprawy Naukowe 10a:75–77

    Google Scholar 

  • Zarzycka H (2001b) Assessment of resistance to Phytophthora infestans in tuber slices and whole tubers. Plant Breeding and Acclimatization Institute, Radzików, Poland. IHAR Monografie i Rozprawy Naukowe 10a:78–80

    Google Scholar 

  • Zhang LP, Lin GJ, Niňo-Liu D, Foolad MR (2003) Mapping QTLs conferring early blight (Alternaria solani) resistance in a Lycopersicon esculentum × L. hirsutum cross by selective genotyping. Mol Breed 12:3–19

    Article  CAS  Google Scholar 

  • Zimnoch-Guzowska E, Marczewski W, Lebecka R, Flis B, Schafer-Pregl R, Salamini F, Gebhardt C (2000) QTL analysis of new sources of resistance to Erwinia carotovora ssp. atroseptica in potato done by AFLP, RFLP, and resistance-gene-like markers. Crop Sci 40:1156–1167

    Article  CAS  Google Scholar 

Download references

Acknowledgments

The authors thank Agim Ballvora and Andreas Rickert for providing PCR primers.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to J. Śliwka.

Additional information

Communicated by R.Waugh

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Cite this article

Śliwka, J., Jakuczun, H., Lebecka, R. et al. The novel, major locus Rpi-phu1 for late blight resistance maps to potato chromosome IX and is not correlated with long vegetation period. Theor Appl Genet 113, 685–695 (2006). https://doi.org/10.1007/s00122-006-0336-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00122-006-0336-9

Keywords

Navigation