Abstract
Patterns of mitochondrial restriction fragment length polymorphism (RFLP) variation were used to resolve more recent relationships among the species of the Felidae ocelot lineage, domestic cat lineage, and pantherine lineage. Twenty-five of 28 restriction enzymes revealed site variation in at least 1 of 21 cat species. The ocelot lineage was resolved into three separate sistertaxa groups: Geoffroy's cat (Oncifelis geoffroyi) and kodkod (O. guigna), ocelot (Leopardus pardalis) and margay (L. wiedii), and pampas cat (Lynchailurus colocolo) and most of the tigrina samples (Leopardus tigrina). Within the domestic cat lineage, domestic cat (Felis catus), European wild cat (F. silvestris), and African wild cat (F. libyca) formed a monophyletic trichotomy, which was joined with sand cat (F. margarita) to a common ancestor. Jungle cat (F. chaus) and black-footed cat (F. nigripes) mtDNAs diverged earlier than those of the other domestic cat lineage species and are less closely related. Within the pantherine lineage, phylogenetic analysis identified two distinct groups, uniting lion (P. leo) with leopard (P. pardus) and tiger (P. tigris) with snow leopard (P. uncia).
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Literature Cited
Avise, J. C. (1991). Ten unorthodox perspectives on evolution prompted by comparative population genetic findings on mitochondrial DNA.Annu. Rev. Genet. 25: 45–69.
Avise, J. C. (1994).Molecular Markers, Natural History and Evolution, Chapman and Hall, New York.
Avise, J. C., Neigel, J. E., and Arnold, J. (1984). Demographic influences of mitochondrial DNA lineage survivorship in animal populations.J. Mol. Evol. 20: 99–105.
Avise, J. C., Arnold, J., Ball, R. M., Bermingham, E., Lamb, T., Neigel, J. E., Reeb, C. A., and Saunders, N. C. (1987). Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics.Annu. Rev. Ecol. Syst. 18: 489–522.
Avise, J. C., Bowen, B. W., Lamb, T., Meylan, A. B., and Bermingham, E. (1992). Mitochondrial DNA evolution at a turtle's pace: Evidence for low genetic variability and reduced microevolutionary rate in the Testudines.Mol. Biol. Evol. 9: 457–473.
Benveniste, R. E. (1985). The contributions of retroviruses to the study of mammalian evolution. In;Molecular Evolutionary Genetics, R. J. Macintyre, ed., pp. 359–417, Plenum Press, New York.
Benveniste, R. E., and Todaro, G. J. (1974). Evolution of C-type viral genes: Inheritance of exogenously acquired viral genes.Nature 252: 456–459.
Benveniste, R. E., Sherr, C. J., and Todaro, G. J. (1975). Evolution of type C viral genes: Origin of feline leukemia virus.Science 190: 886–888.
Berta, A. (1983). A new species of small cat (Felidae) from the late Pliocene-early Pleistocene Uquian of Argentina.J. Mammal. 64: 720–725.
Brown, W. M. (1985). The mitochondrial genome of animals. In:Molecular Evolutionary Genetics, R. J. MacIntyre, ed., pp. 95–130, Plenum Press, New York.
Collier, G. E., and O'Brien, S. J. (1985). A molecular phylogeny of the Felidae: Immunological distance.Evolution 39: 473–487.
Cronin, M. A. (1991). Mitochondrial-DNA phylogeny of deer (Cervidae).J. Mammal. 72: 553–566.
DeBry, R. W., and Slade, N. A. (1985). Cladistic analysis of restiction endonuclease cleavage maps within a maximum-likelihood framework.Gyst. Zool. 34: 21–34.
DeSalle, R., and Templeton, A. R. (1988). Founder effects and the rate of mitochondrial DNA evolution in HawaiianDrosophila.Evolution 42: 1076–1084.
Ewer, R. F. (1973).The Carnivores, Cornell University Press, Ithaca, NY.
Farris, J. S. (1977). Phylogenetic analysis under Dollo's law.Syst. Zool. 26: 77–88.
Felsenstein, J. (1993).PHYLIP, Phylogeny Inference Package (Version 3.5), University of Washington, Seattle.
Ficcarelli, G. (1984). The Villafranchian cheetahs from Tuscany and remarks on the dispersal and evolution of the genusAcinomyx.Palaeontogr. Italica 73: 94–103.
Glass, G. E., and Martin, L. D. (1978). A multivariate comparison of some extant and fossil Felidae.Carnivore 1: 80–87.
Guggisberg, C. A. W. (ed.) (1975).Wild Cats of the World, Taplinger, New York.
Hemmer, H. (1978). The evolutionary systematics of living Felidae: Present status and current problems.Carnivore 1: 71–78.
Herrington, S. J. (1986).Phylogenetic Relationships of the Wild Cats of the World, Ph.D. dissertation, University of Kansas, Lawrence.
Hunt, R. M. (1989). Evolution of the aeluroid Carnivora: Significance of the ventral promontorial process of the petrosal, and the origin of basicranial patterns in the living families.Am. Mus. Novit. 2930; 1–32.
Janczewski, D. N., Modi, W. S., Stephens, J. C., and O'Brien, S. J. (1995). Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae.Mol. Biol. Evol. 12: 690–707.
Kurtén, B. (1965). On the evolution of the European wild cat,Felis silvestres Schreber.Acta Zool. Fennica 111: 1–29.
Lopez, J. V., Yuhki, N., Masuda, R., Modi, W., and O'Brien, S. J. (1994).Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat.J. Mol. Evol. 39: 174–190.
Lopez, J. V., Cevario, S., and O'Brien, S. J. (1996). Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome.Genomics 33: 229–246.
Martin, A. P., and Palumbi, S. R. (1993). Body size, metabolic rate, generation time, and the molecular clock.Proc. Natl. Acad. Sci. USA 90: 4087–4091.
Martin, A. P., Naylor, G. J. P., and Palumbi, S. R. (1992). Rates of mitochondrial DNA evolution in sharks are slow compared with mammals.Nature 357: 153–155.
Martin, L. D. (1989). Fossil history of the terrestrial Carnivora. In:Carnivore Behavior, Ecology and Evolution, J. L. Gittleman, ed., pp. 536–568, Cornell University Press, Ithaca, NY.
Masuda, R., Lopez, J. V., Pecon Slattery, J., Yuhki, N., and O'Brien, S. J. (1996). Molecular phylogeny of mitochondrial 12s rRNA and cytochrome b sequences in the Felidae: Ocelot and domestic cat lineages.Mol. Phylo. Evol. (in press).
Menotti-Raymond, M., and O'Brien, s. J. (1993). Dating the genetic bottleneck of the African cheetah.Proc. Natl. Acad. Sci. USA 90: 3172–3176.
Miththapala, S., Seidensticker, J., and O'Brien, S. J. (1996). Phylogeographic subspecies recognition in the leopards (Panthera pardus): Molecular genetic variation.Conserv. Biol. (in press).
Modi, W. S., and O'Brien, S. J. (1988). Quantitative cladistic analysis of chromosomal banding among species in three orders of mammals: Hominoid primates, felids and arvicolid rodents. In;Chromosome Structure and Function, J. P. Gustafson and R. Appels, eds., pp. 215–242, Plenum Press, New York.
Modi, W. S., Nash, W. G., Ferrari, A. C., and O'Brien, S. J. (1987). Cytogenetic methodologies for gene mapping and comparative analyses in mammalian cell culture systems.Gene Anal. Tech. 4: 75–85.
Moritz, C., Dowling, T. E., and Brown, W. M. (1987). Evolution of animal mitochondrial DNA: Relevance for population biology and systematics.Annu. Rev. Ecol. Syst. 18: 269–292.
Neff, N. A. (1982).The Big Cats: The Paintings of Guy Coheleach. Abrams, New York.
Nei, M., and Li, W. H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases.Proc. Natl. Acad. Sci. USA 76: 5269–5273.
Nei, M., and Tajima, F. (1985). Evolutionary change of restriction cleavage sites and phylogenetic inference for man and apes.Mol. Biol. Evol. 2: 189–205.
O'Brien, S. J. (1986). Molecular genetics in the domestic cat and its relatives.Trends Genet. 2: 137–142.
O'Brien, S. J. (1994a). Genetic and phylogenetic analyses of endangered species.Annu. Rev. Genet. 28: 467–489.
O'Brien, S. J. (1994b). A role for molecular genetics in biological conservation.Proc. Natl. Acad. Sci. USA 91: 5748–5755.
O'Brien, S. J., Collier, G. E., Benveniste, R. E., Nash, W. G., Newman, A. K., Simonson, J. M., Eichelberger, M. A., Seal, U. S., Bush, M., and Wildt, D. E. (1987). Setting the molecular clock in Felidae: The great cats,Panthera. In:Tigers of the World, R. L. Tilson, ed., pp. 10–27, Noyes, Park Ridge, NJ.
O'Brien, S. J., Roelke, M. E., Yuhki, N., Richards, K. W., Johnson, W. E., Franklin, W. L., Anderson, A. E., Bass, O. L., Jr., Belden, R. C., and Martenson, J. S. (1990). Genetic introgression within the Florida pantherFelis concolor coryi.Natl. Geogr. Res. 6: 485–494.
O'Brien, S. J., Martenson, J. S., Johnson, W. E., Miththapala, S., Janczewski, D. N., Pecon Slattery, J., Gilbert, D. A., Packer, C., Roelke, M. E., Bush, M., and Wildt, D. E. (1996). Conservation genetics of the Felidae: In:Conservation Genetics of Rare and Endangered Species, J. C. Avise and J. Hamrick, eds., pp. 50–74, Chapman and Hall, NY.
Pecon Slattery, J., Johnson, W. E., Goldman, D., O'Brien, S. J. (1994). Phylogenetic reconstruction of South American felids defined by protein electrophoresis.J. Mol. Evol. 39: 296–305.
Randi, E., and Ragni, B. (1991). Genetic variability and biochemical systematics of domestic and wild cat populations (Felis silvestris: Felidae).J. Mammal. 72: 79–88.
Reeves, R. H., and O'Brien, S. J. (1984). Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences.J. Virol. 52: 164–171.
Salles, L. O. (1992). Felid phylogenetics: Extant taxa and skull morphology (Felidae, Aeluroidea).Am. Mus. Novit. 3047: 1–67.
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989).Molecular Cloning, a Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
Savage, D. E., and Russell, D. E. (1983).Mammalian Paleofaunas of the World, Addison-Wesley, London.
Seidensticker, J., and Lumpkin, S. (eds.) (1991).Great Cats: Majestic Creatures of the Wild, Weldon Owen, Sydney, Australia.
Swofford, D. L. (1993).PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1.1. Computer program, Smithsonian Institute, Washington, DC.
Templeton, A. R. (1983). Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes.Evolution 37: 221–244.
Turner, A. (1987). New fossil carnivore remains from the Sterkfontein hominid site (Mammalia: Carnivora).Ann: Transvaal. Mus. 34: 319–347.
Wayne, R. K., Benveniste, R. E., Janczewski, D. N., and O'Brien, S. J. (1989). Molecular and biochemical evolution of the Carnivora. In:Carnivore Behavior, Ecology and Evolution, J. L. Gittleman, ed., pp. 465–494. Cornell University Press, Ithaca, NY.
Wayne, R. K., Van Valkenburgh, B., and O'rrien, S. J. (1991). Molecular distance and divergence time in carnivores and primates.Mol. Biol. Evol. 8: 297–319.
Werderlin, L. (1985). Small Pleistocene felines of North America.J. Vert. Paleo. 5: 194–210.
Wilson, A. C., Cann, R. L., Carr, S. M., George, M., Gyllensten, U. B., Helm-Bychowski, K. M., Higuchi, R. G., Palumbi, S. R., Prager, E. M., Sage, R. D., and Stoneking, M. (1985). Mitochondrial DNA and two perspectives on evolutionary genetics.Biol. J. Linn. Soc. 26: 375–400.
Wolpoff, M. (1989). Multiregional evolution: The fossil alternative to Eden. In:The Human Revolution: Behavioural and Biological Perspectives on the Origins of Modern Humans, P. Mellars and C. Stringer eds., pp. 62–108, Princeton University Press, Princeton, NJ.
Wozencraft, M. (1993). Order Carnivora: In:Mammal Species of the World, 2nd ed., D. E. Wilson, and D. M. Reeder, eds., pp. 279–348, Smithsonian Institution Press, Washington, DC.
Wu, C.-I. (1991): Inferences of species phylogeny in relation to segregation of ancient polymorphisms.Genetics 127: 429–435.
Wurster-Hill, D. H., and Centerwall, W. R. (1982). The interrelationships of chromosome banding patterns in canids, mustelids, hyena, and felids.Cytogenet. Cell Genet. 15: 306–331.
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Johnson, W.E., Dratch, P.A., Martenson, J.S. et al. Resolution of recent radiations within three evolutionary lineages of felidae using mitochondrial restriction fragment length polymorphism variation. J Mammal Evol 3, 97–120 (1996). https://doi.org/10.1007/BF01454358
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DOI: https://doi.org/10.1007/BF01454358