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  • Conference proceedings
  • © 2010

Algorithms in Bioinformatics

10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010, Proceedings

Editors:

  1. Vincent Moulton

    1. School of Computing Sciences, University of East Anglia, Norwich, UK

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  2. Mona Singh

    1. Lewis-Sigler Institute for Integrative Genomics, Department of Computer Science, Princeton University, Princeton, USA

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6293)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): WABI: International Workshop on Algorithms in Bioinformatics

Conference proceedings info: WABI 2010.

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Table of contents (30 papers)

  1. Front Matter

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  2. Biomolecular Structure: RNA, Protein and Molecular Comparison

    2. Sparse Estimation for Structural Variability

      • Raghavendra Hosur, Rohit Singh, Bonnie Berger
      Pages 13-27

    3. Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors

      • Thomas G. Kristensen, Christian N. S. Pedersen
      Pages 28-39

    4. Sparsification of RNA Structure Prediction Including Pseudoknots

      • Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, S. Cenk Sahinalp
      Pages 40-51

    5. Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs

      • Corinna Theis, Stefan Janssen, Robert Giegerich
      Pages 52-64

  3. Comparative Genomics

    1. Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss

      • Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk
      Pages 78-89

    2. Genomic Distance with DCJ and Indels

      • Marília D. V. Braga, Eyla Willing, Jens Stoye
      Pages 90-101

    3. Listing All Sorting Reversals in Quadratic Time

      • Krister M. Swenson, Ghada Badr, David Sankoff
      Pages 102-110

  4. Haplotype and Genotype Analysis

    1. Discovering Kinship through Small Subsets

      • Daniel G. Brown, Tanya Berger-Wolf
      Pages 111-123

    3. Haplotypes versus Genotypes on Pedigrees

      • Bonnie Kirkpatrick
      Pages 136-147

    4. Haplotype Inference on Pedigrees with Recombinations and Mutations

      • Yuri Pirola, Paola Bonizzoni, Tao Jiang
      Pages 148-161

  5. High-throughput Data Analysis: Next Generation Sequencing and Flow Cytometry

    1. Identifying Rare Cell Populations in Comparative Flow Cytometry

      • Ariful Azad, Johannes Langguth, Youhan Fang, Alan Qi, Alex Pothen
      Pages 162-175

    2. Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA

      • Miklós Csűrös, Szilveszter Juhos, Attila Bérces
      Pages 176-188

    3. Design of an Efficient Out-of-Core Read Alignment Algorithm

      • Arun S. Konagurthu, Lloyd Allison, Thomas Conway, Bryan Beresford-Smith, Justin Zobel
      Pages 189-201

    4. Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data

      • Marius Nicolae, Serghei Mangul, Ion Măndoiu, Alex Zelikovsky
      Pages 202-214

  6. Networks

    1. Improved Orientations of Physical Networks

      • Iftah Gamzu, Danny Segev, Roded Sharan
      Pages 215-225

    2. Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms

      • Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot et al.
      Pages 226-237
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  1. Algorithms in Bioinformatics

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Keywords

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Editors and Affiliations

  • School of Computing Sciences, University of East Anglia, Norwich, UK

    Vincent Moulton

  • Lewis-Sigler Institute for Integrative Genomics, Department of Computer Science, Princeton University, Princeton, USA

    Mona Singh

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Bibliographic Information

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Buy it now

eBook USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

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