Bioinformatics

1. Front Matter

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2. Molecular computing: From conformational pattern recognition to complex processing networks

   • Michael Conrad, Klaus-Peter Zauner

   Pages 1-10

3. A look at the visual modeling of plants using L-systems

   • Przemyslaw Prusinkiewicz

   Pages 11-29

4. Bioinformatics and cheminformatics in the drug discovery cycle

   • Hwa A. Lim

   Pages 30-43

5. New developments in linking of biological databases and computer-generation of annotation: SWISS-PROT and its computer-annotated supplement TREMBL

   • Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch

   Pages 44-51

6. EpoDB: An erythropoiesis gene expression database in progress

   • Fidel Salas, Juergen Haas, Christian J. Stoeckert Jr, G. Christian Overton

   Pages 52-61

7. Recent advances in molecular distance geometry

   • Timothy F. Havel, Sven Hyberts, Igor Najfeld

   Pages 62-71

8. Three models of gene regulation in E. coli

   • Julio Collado-Vides, Araceli M. Huerta, Kathleen Klose

   Pages 72-78

9. A new method to develop highly specific models for regulatory DNA regions

   • Kornelie Frech, Kerstin Quandt, Thomas Werner

   Pages 79-87

10. Towards an object-oriented framework for the modeling of integrated metabolic processes

    • G. Breuel, E. D. Gilles

    Pages 88-98

11. TRRD and COMPEL databases on transcription linked to TRANSFACAS as tools for analysis and recognition of regulatory sequences

    • A. E. Kel, O. V. Kel, O. V. Vishnevsky, M. P. Ponomarenko, I. V. Ischenko, H. Karas et al.

    Pages 99-105

12. Integrating heterogeneous datasets in genomic mapping: Radiation hybrids, YACs, genes and STS markers over the entire human chromosome X

    • Andrei Grigoriev, Johan Kumlien, Hans Lehrach

    Pages 106-114

13. A clustering approach to Generalized Tree Alignment with application to Alu repeats

    • Benno Schwikowski, Martin Vingron

    Pages 115-124

14. Simple folding model for HP lattice proteins

    • Erich Bornberg-Bauer

    Pages 125-136

15. Fast protein fold recognition and accurate sequence-structure alignment

    • Ralf Zimmer, Ralf Thiele

    Pages 137-146

16. Carbohydrates: Second-class citizens in biomedicine and in bioinformatics?

    • Claus-Wilhelm von der Lieth, Elke Lang, Tibor Kozár

    Pages 147-155

17. Structural constraints and neutrality in RNA

    • Ulrike Göbel, Christian V. Forst, Peter Schuster

    Pages 156-165

18. A systematic approach to finding new lead structures having biological activity

    • C. H. Schwab, S. Handschuh, A. Teckentrup, M. Wagener, J. Sadowski, J. Gasteiger et al.

    Pages 166-177

19. Visualization and analysis of the complete yeast genome

    • Kaps A., Heumann K., Frishman D., Bahr M., Mewes H. W.

    Pages 178-188

20. Virtual reality modeling for structural biology

    • Jürgen Sühnel

    Pages 189-198

This book constitutes the strictly refereed post-workshop proceedings of the German Conference on Bioinformatics, GCB'96, held in Leipzig, Germany, in September/October 1996. The volume presents 18 revised full papers together with three invited papers; these contributions were selected after a second round of reviewing from the 91 conference presentations. The book addresses current issues in computational biology and biologically inspired computing. The papers are organized in sections on biological and metabolic pathways, sequence analysis, molecular modeling, visualization, and formal languages, and DNA.

• Biologically Inspired Computation
• Formal Languages
• Molecular Modeling
• Sequence Analysis
• Visualization
• bioinformatics
• biology
• formal language
• modeling

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