Advances in Bioinformatics and Computational Biology

1. Front Matter

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2. An Extensible Framework for Genomic and Metagenomic Analysis

   • Luciano A. Digiampietri, Vivian M. Y. Pereira, Camila I. Costa, Geraldo J. dos Santos Júnior, Fernando M. Stefanini, Caio R. N. Santiago

   Pages 1-8

3. On the Multichromosomal Hultman Number

   • Pedro Feijão, Fábio Viduani Martinez, Annelyse Thévenin

   Pages 9-16

4. Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction

   • Fabiana Goés, Ronnie Alves, Leandro Corrêa, Cristian Chaparro, Lucinéia Thom

   Pages 17-24

5. FUNN-MG: A Metagenomic Systems Biology Computational Framework

   • Leandro Corrêa, Ronnie Alves, Fabiana Goés, Cristian Chaparro, Lucinéia Thom

   Pages 25-32

6. FluxMED: An Adaptable and Extensible Electronic Health Record System

   • Alessandra C. Faria-Campos, Lucas Hanke, Paulo Henrique Batista, Vinícius Garcia, Sérgio Campos

   Pages 33-40

7. Influence of Sequence Length in Promoter Prediction Performance

   • Sávio G. Carvalho, Renata Guerra-Sá, Luiz H. de C. Merschmann

   Pages 41-48

8. Evolution of Genes Neighborhood within Reconciled Phylogenies: An Ensemble Approach

   • Cedric Chauve, Yann Ponty, João Paulo Pereira Zanetti

   Pages 49-56

9. Dynamic Programming for Set Data Types

   • Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler

   Pages 57-64

10. Using Binary Decision Diagrams (BDDs) for Memory Optimization in Basic Local Alignment Search Tool (BLAST)

    • Demian Oliveira, Fernando Braz, Bruno Ferreira, Alessandra Faria-Campos, Sérgio Campos

    Pages 65-72

11. A Multi-Objective Evolutionary Algorithm for Improving Multiple Sequence Alignments

    • Wilson Soto, David Becerra

    Pages 73-82

12. BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases

    • Daniel Lichtnow, Ronnie Alves, Oscar Pastor, Verónica Burriel, José Palazzo Moreira de Oliveira

    Pages 83-90

13. Structural Comparative Analysis of Secreted NTPDase Models of Schistosoma mansoni and Homo sapiens

    • Vinicius Carius de Souza, Vinicius Schmitz Nunes, Eveline Gomes Vasconcelos, Priscila Faria-Pinto, Priscila V. S. Z. Capriles

    Pages 91-98

14. Length and Symmetry on the Sorting by Weighted Inversions Problem

    • Christian Baudet, Ulisses Dias, Zanoni Dias

    Pages 99-106

15. Storage Policy for Genomic Data in Hybrid Federated Clouds

    • Ricardo Gallon, Maristela Holanda, Aletéia Araújo, Maria E. Walter

    Pages 107-114

16. Genome-Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115

    • Hugo Schneider, Sebastian Bartschat, Gero Doose, Lucas Maciel, Erick Pizani, Marcelo Bassani et al.

    Pages 115-122

17. Multi-scale Simulation of T Helper Lymphocyte Differentiation

    • P. Tieri, V. Prana, T. Colombo, D. Santoni, F. Castiglione

    Pages 123-134

18. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework

    • Nina Luhmann, Cedric Chauve, Jens Stoye, Roland Wittler

    Pages 135-143

19. Quality Metrics for Benchmarking Sequences Comparison Tools

    • Erwan Drezen, Dominique Lavenier

    Pages 144-153

20. Back Matter

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This book constitutes the refereed proceedings of the 9th Brazilian Symposium on Bioinformatics, BSB 2014, held in Belo Horizonte, Brazil, in October 2014. The 18 revised full papers presented were carefully reviewed and selected from 32 submissions. The papers cover all aspects of bioinformatics and computational biology.

• algorithms
• bioinformatics
• classification
• computational biology
• data mining
• database selection
• dynamic programming
• evolutionary algorithms
• formal grammar
• gene expressions
• graph visualization
• machine learning
• molecular biology databases
• predictive models
• support vector machine
• systems biology
• algorithm analysis and problem complexity

• Departamento de Ciência de Computação, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

  Sérgio Campos

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