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Next Generation Sequencing

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1712)

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Table of contents (16 protocols)

  1. Front Matter

    Pages i-xiii
  2. Measuring Nascent Transcripts by Nascent-seq

    • Fei Xavier Chen, Stacy A. Marshall, Yu Deng, Sun Tianjiao
    Pages 19-26
  3. Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis

    • Lieselot Deleye, Dieter De Coninck, Dieter Deforce, Filip Van Nieuwerburgh
    Pages 27-42
  4. Hi-Plex for Simple, Accurate, and Cost-Effective Amplicon-based Targeted DNA Sequencing

    • Bernard J. Pope, Fleur Hammet, Tu Nguyen-Dumont, Daniel J. Park
    Pages 53-70
  5. Sequencing of Genomes from Environmental Single Cells

    • Robert M. Bowers, Janey Lee, Tanja Woyke
    Pages 97-111
  6. SNP Discovery from Single and Multiplex Genome Assemblies of Non-model Organisms

    • Phillip A. Morin, Andrew D. Foote, Christopher M. Hill, Benoit Simon-Bouhet, Aimee R. Lang, Marie Louis
    Pages 113-144
  7. A Bloody Primer: Analysis of RNA-Seq from Tissue Admixtures

    • Casey P. Shannon, Chen Xi Yang, Scott J. Tebbutt
    Pages 175-201
  8. Next-Generation Sequencing of Genome-Wide CRISPR Screens

    • Edwin H. Yau, Tariq M. Rana
    Pages 203-216
  9. Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells

    • Marie Holt, Anne Costanzo, Louis Gioia, Brian Abe, Andrew I. Su, Luc Teyton
    Pages 217-238
  10. Investigate Global Chromosomal Interaction by Hi-C in Human Naive CD4 T Cells

    • Xiangzhi Meng, Nicole Riley, Ryan Thompson, Siddhartha Sharma
    Pages 239-252
  11. Back Matter

    Pages 263-266

About this book

This volume covers a wide range of various fields of research, with the common thread being Next Generation Sequencing (NGS) related methods and applications, as well as analysis and interpretation of the data obtained. Chapters guide readers through the highly dynamic processes of translational and transcriptional profiling of a cell, method to detect copy number alterations (CNAs), targeted sequencing applications,  method called “Hi-Plex” to characterize known polymorphic loci, single-cell of DNA or RNA, identify and characterize rare circulating CD4 T cells, and computational pipeline for RNAseq analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Next Generation Sequencing: Methodsand Protocols aims to be useful and informative for further study into this vital field. 

Editors and Affiliations

  • Next Generation Sequencing and Microarray Core Facility, The Scripps Research Institute, La Jolla, USA

    Steven R. Head, Phillip Ordoukhanian

  • Department of Molecular Medicine, The Scripps Research Institute Center for Organ and Cell Transplantation, La Jolla, USA

    Daniel R. Salomon

Bibliographic Information

  • Book Title: Next Generation Sequencing

  • Book Subtitle: Methods and Protocols

  • Editors: Steven R. Head, Phillip Ordoukhanian, Daniel R. Salomon

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-7514-3

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2018

  • Hardcover ISBN: 978-1-4939-7512-9Published: 10 December 2017

  • Softcover ISBN: 978-1-4939-8507-4Published: 22 June 2018

  • eBook ISBN: 978-1-4939-7514-3Published: 09 December 2017

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIII, 266

  • Number of Illustrations: 10 b/w illustrations, 41 illustrations in colour

  • Topics: Human Genetics

Buy it now

Buying options

eBook USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access