Skip to main content
Log in

Designing and Testing Oligonucleotide Primers for Amplification and Sequencing of Archaeal 16S rRNA Genes

  • Published:
Microbiology Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

REFERENCES

  1. Stahl, D.A., Molecular Approaches for the Measurement of Density, Diversity and Phylogeny, Manual of Environmental Microbiology, Hurst, C.J., Ed., Washington, DC: Am. Soc. Microbiol., 1997, pp. 102-114.

    Google Scholar 

  2. Vetriani, C., Jannasch, H.W., MacGregor, B., Stahl, D.A., and Reysenbach, A.-L., Population Structure and Phylogenetic Characterization of Marine Benthic Archaea in Deep-Sea Sediments, Appl. Environ. Microbiol., 1999, vol. 65, no. 10, pp. 4375-4384.

    Google Scholar 

  3. Munson, M.A., Nedwell, D.B., and Embley, T.M., Phylogenetic Diversity of Archaea in Sediment Samples from a Coastal Salt Marsh, Appl. Environ. Microbiol., 1997, vol. 63, pp. 4729-4733.

  4. Hershberger, K.L., Barns, S.M., Reysenbach, A.L., Dawson, S.C., and Pace, N.R., Crenarchaeotain Low Temperature Terrestrial Environment, Nature,1996, vol. 384, p. 420.

    Google Scholar 

  5. Kato, C., Li, L., Tamaoka, J., and Horikoshi, K., Molecular Analysis of the Sediment of the 11000 m Deep Mariana Trench, Extremophiles, 1997, vol. 1, pp. 117-123.

    Google Scholar 

  6. McGregor, B.J., Moser, D.P., Alm, E.W., Nealson, K.H., and Stahl, D.A., Crenarchaeotain Lake Michigan Sediment, Appl. Environ. Microbiol., 1997, vol. 63, pp. 1178-1181.

    Google Scholar 

  7. Vetriani, C., Reysenbach, A.L., and Dore, J., Recovery and Phylogenetic Analysis of Archaeal rRNA Sequences from Continental Shelf Sediments, FEMS Microbiol. Lett.,1998, vol. 161, pp. 83-88.

    Google Scholar 

  8. Grobkopf, R., Stubner, S., and Leisak, W., Novel Euryarchaeotal Lineages Detected on Rice Roots and in Anoxic Bulk Soil of Flooded Rice Microcosms, Appl. Environ. Microbiol., 1998, vol. 64, pp. 4983-4989.

    Google Scholar 

  9. Grant, S., Grant, W.D., Jones, B.E., Cato, C., and Li, L., Novel Archaeal Phylotypes from an East African Alkaline Saltern, Extremophiles,1999, vol. 3, pp. 139-145.

    Google Scholar 

  10. Barns, S.M., Delwiche, C.F., Palmer, J.D., and Pace, N.R., Perspectives on Archaeal Diversity, Thermophily and Monophyly from Environmental rRNA Sequences, Proc. Natl. Acad. Sci. USA, 1996, vol. 93, pp. 9188-9193.

    Google Scholar 

  11. Edwards, U., Rogall, T., Bloeker, H., Ende, M.D., and Boeettge, E.C., Isolation and Direct Complete Nucleotide Determination of Entire Genes, Characterization of Gene Coding for 16S Ribosomal RNA, Nucleic Acids Res., 1989, vol. 17, pp. 7843-7853.

    Google Scholar 

  12. Lane, D.J., 16S/23S rRNA Sequencing, Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E. and Goodfellow, M., Eds., New York: Wiley, 1991, pp. 115-147.

    Google Scholar 

  13. Alchenbach, L. and Woese, C., Appendix 6: 16S and 23S rRNA-like Primers, Archaea: A Laboratory Manual, Robb, F.T. et al., Eds., Cold Spring Harbor: Cold Spring Harbor Lab., 1995.

    Google Scholar 

  14. Reysenbach, A.-L. and Pace, N.R., Reliable Amplification of Hyperthermophilic Archaeal 16S rRNA Genes by the Polymerase Chain Reaction, Archaea: A Laboratory Manual, Robb, F.T. et al., Eds., Cold Spring Harbor: Cold Spring Harbor Lab., 1995.

    Google Scholar 

  15. Brunk, C.F., Avaniss-Aghajani, E., and Brunk, C.A., A Computer Analysis of Primer and Probe Hybridization Potential with Bacterial Small-Subunit rRNA Sequences, Appl. Environ. Microbiol., 1996, vol. 62, pp. 872-879.

    Google Scholar 

  16. Rozanova, E.P., Borzenkov, I.A., Tarasov, A.L., Suntsova, L.A., Dong, Ch.L., Belyaev, S.S., and Ivanov, M.V., Microbial Processes in a High-Temperature Oil Field, Mikrobiologiya,2001, vol. 70, pp. 118-127.

    Google Scholar 

  17. Widdel, F., Anaerober Abbau von Fattsauren und Bonzocsaurt durch neu isolierte Arton Sulfat-Reduzierender Bakterien, PhD Thesis, Gottingen, University of Gottingen, 1980.

    Google Scholar 

  18. Pimenov, N.V., Rusanov, I.I., Poglazova, M.N., Mityushina, L.L., Sorokin, D.Yu., Khmelenina, V.N., and Trotsenko, Yu.A., Bacterial Mats on Coral-like Structures at Methane Seeps in the Black Sea, Mikrobiologiya, 1997, vol. 66, pp. 421-428.

    Google Scholar 

  19. Tourova, T.P., Kuznetsov, B.B., Novikova, E.V., Poltaraus, A.B., and Nazina, T.N., Heterogeneity of the Nucleotide Sequences of the 16S rRNA Genes of the Type Strain of Desulfotomaculum kuznetsovii, Mikrobiologiya, 2001, vol. 60, pp. 788-795.

    Google Scholar 

  20. Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor: Cold Spring Harbor Lab., 1989.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kolganova, T.V., Kuznetsov, B.B. & Tourova, T.P. Designing and Testing Oligonucleotide Primers for Amplification and Sequencing of Archaeal 16S rRNA Genes. Microbiology 71, 243–246 (2002). https://doi.org/10.1023/A:1015122926687

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1015122926687

Keywords

Navigation