Skip to main content
Log in

Soil microbial community is resilient to thinning disturbance

  • Research Article
  • Published:
Tropical Ecology Aims and scope Submit manuscript

Abstract

To engage sustainable forest management, understanding the impact of disturbances on the stability of soil microorganisms is important. This study reported the immediate effects of two-level thinning intensities on the soil microbial population, community composition and functions of a plantation forest over two years. Results showed that the thinning of Cryptomeria japonica forest significantly increased viable counts of soil bacteria from 7.7 × 106 to 1.4 × 107 or 1.6 × 107 in the 3rd month and the effect subsided in the 6th month post-thinning. The counts of actinobacteria, cellulolytic, nitrogen-fixing and phosphate-solubilizing bacteria groups maintained stable populations in the forest soils. Denaturing gradient gel electrophoresis profiles indicated that soil bacterial communities significantly differed among 25% thinning, 50% thinning and control treatment from the 12th to 18th month post-thinning, with no significant differences after 22 months. The community level physiological profiles were significantly different between control and thinning treatments in the 12th month post-thinning, the impacts of thinning then subsided by the 22nd month post-thinning as well. Soil bacteria were sensitive to thinning disturbances, but with resilience, their community and function approached to the control status in 2 years. This study demonstrates that the soil microbes of Taiwanese C. japonica forests are very sensitive to thinning disturbances, but recover stability after a relatively short period of time.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Barbhuiya AR, Arunachalam A, Pandey HN, Khan ML, Arunachalam K, Khan ML, Nath PC (2004) Dynamics of soil microbial biomass C, N and P in disturbed and undisturbed stands of a tropical wet-evergreen forest. Eur J Soil Biol 40:113–121

    CAS  Google Scholar 

  • Barbhuiya AR, Arunachalam A, Pandey HN, Khan ML, Arunachalam K (2008) Effects of disturbance on fine roots and soil microbial biomass C, N and P in a tropical rainforest ecosystem of Northeast India. Curr Sci 94:572–574

    Google Scholar 

  • Bennett JA, Maherali H, Reinhart KO, Lekberg Y, Hart MM, Klironomos J (2017) Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics. Science 355:181–184

    CAS  PubMed  Google Scholar 

  • Cantrell SA, Molina M, Lodge DJ, Rivera-Figueroa FJ, Ortiz-Hernández ML, Marchetti AA, Cyterski MJ, Pérez-Jiménez JR (2014) Effects of a simulated hurricane disturbance on forest floor microbial communities. For Ecol Manag 332:22–31

    Google Scholar 

  • Chapin FS III, Matson PA, Mooney HA (2002) Terrestrial decomposition. In: Chapin MC (ed) Principles of terrestrial ecosystem ecology. Springer, New York, pp 152–155

    Google Scholar 

  • Chatterjee A, Vance GF, Pendall E, Stahl PD (2008) Timber harvesting alters soil carbon mineralization and microbial community structure in coniferous forests. Soil Biol Biochem 40:1901–1907

    CAS  Google Scholar 

  • Cho ST, Tsai SH, Ravindran A, Selvam A, Yang SS (2008) Seasonal variation of microbial populations and biomass in Tatachia grassland soils of Taiwan. Environ Geochem Health 30:255–272

    CAS  PubMed  Google Scholar 

  • Chuang CC, Kuo YL, Chao CC, Chao WL (2007) Solubilization of inorganic phosphates and plant growth promotion by Aspergillus niger. Biol Fert Soils 43:575–584

    CAS  Google Scholar 

  • Chung MY, Lai CM, Ke GR, Wang PH, Wang MK (2013) Effects of thinning intensity of plantation forest on soil enzyme activities and soil functional diversity. Taiwanese J Agric Chem Food Sci 51:216–222

    CAS  Google Scholar 

  • Clark KR, Warwick RM (2001) Change in marine communities: an approach to statistical analysis and interpretation. Primer-E Ltd., Plymouth

    Google Scholar 

  • Connell L, Redman R, Craig S, Rodriguez R (2006) Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica. Soil Biol Biochem 38:3083–3094

    CAS  Google Scholar 

  • Cookson WR, O’Donnell AJ, Grant CD, Grierson PE, Murphy DV (2008) Impact of ecosystem management on microbial community level physiological profiles of postmining forest rehabilitation. Microb Ecol 55:321–332

    CAS  PubMed  Google Scholar 

  • Delvasto P, Valverde A, Ballester A, Igual JM, Muñoz JA, Gonzàlez F, Blàzquez ML, García C (2006) Characterization of brushite as a re-crystallization product formed during bacterial solubilization of hydroxyapatite in batch cultures. Soil Biol Biochem 38:2645–2654

    CAS  Google Scholar 

  • Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HTS, Bodelier PLE, Whiteley AS, van Veen JA, Kowalchuk GA (2010) Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2. Proc Natl Acad Sci 107:10938–10942

    CAS  PubMed  PubMed Central  Google Scholar 

  • Fan KH, Kuo YL (2010) Effects of thinning management on emission of soil CO2 flux of Cryptomeria japonica plantations. In: Proceedings of symposium on influences of plantation thinning on biodiversity and ecosystem function, Taiwan Forestry Research Institute, Taipei, pp 29–43

  • Fell JW, Scorzetti G, Connell L, Craig S (2006) Biodiversity of microeukaryotes in Antarctic Dry Valley soils with <5% soil moisture. Soil Biol Biochem 38:3107–3119

    CAS  Google Scholar 

  • Fenchel T, Finlay BJ (2004) The ubiquity of small species: patterns of local and global diversity. Bioscience 54:777–784

    Google Scholar 

  • Garland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level-sole-carbon-source-utilization. Appl Environ Microbiol 57:2351–2359

    CAS  PubMed  PubMed Central  Google Scholar 

  • Girisha GK, Condron LM, Clinton PW, Davis MR (2003) Decomposition and nutrient dynamics of green and freshly fallen radiata pine (Pinus radiata) needles. For Ecol Manag 179:169–181

    Google Scholar 

  • Governo R, Lockaby BG (2004) Silvicultural management within streamside management zones of intermittent streams: effects on decomposition, productivity, nutrient cycling, and channel vegetation. South J App For 28:211–224

    CAS  Google Scholar 

  • Grady KC, Hart SC (2006) Influences of thinning, prescribed burning, and wildfire on soil processes and properties in southwestern ponderosa pine forests: a retrospective study. For Ecol Manag 234:123–135

    Google Scholar 

  • Grayston SJ, Rennenberg H (2006) Assessing effects of forest management on microbial community structure in a central European beech forest. Can J For Res 36:2595–2604

    Google Scholar 

  • Hannam KD, Quideau SA, Kishchuk BD (2006) Forest floor microbial communities in relation to stand composition and timber harvesting in northern Alberta. Soil Biol Biochem 38:2565–2575

    CAS  Google Scholar 

  • Hartmann M, Niklaus PA, Zimmermann S, Schmutz S, Kremer J, Abarenkov K, Lüscher P, Widmer F, Frey B (2014) Resistance and resilience of the forest soil microbiome to logging-associated compaction. ISME J 8:226–244

    CAS  PubMed  Google Scholar 

  • Haynes RJ (2005) Labile organic matter fractions as central components of the quality of agricultural soils: an overview. Adv Agron 85:221–268

    CAS  Google Scholar 

  • Houston APC, Visser S, Lautenschlager RA (1998) Microbial processes and fungal community structure in soils from clear-cut and unharvested areas of two mixed wood forest. Can J Bot 76:630–640

    Google Scholar 

  • Hsieh TH (2010) Effect of thinning management on understory layer of Cryptomeria japonica plantations. In: Proceedings of symposium on influences of plantation thinning on biodiversity and ecosystem function, Taiwan Forestry Research Institute, Taipei, pp 45–51

  • Johnson LF, Curl EA (1972) Methods for research on the ecology of soil-borne plant pathogens. Burgess Publishing Company, Minneapolis

    Google Scholar 

  • Kara O, Bolat I, Cakiroglu K, Ozturk M (2008) Plant canopy effects on litter accumulation and soil microbial biomass in two temperate forests. Biol Fertil Soils 45:193–198

    Google Scholar 

  • Knelman JE, Schmidt SK, Lynch RC, Darcy JL, Castle SC, Cleveland CC, Nemergut DR (2014) Nutrient addition dramatically accelerates microbial community succession. PLoS ONE 9:e102609

    PubMed  PubMed Central  Google Scholar 

  • Li H, Zhang Y, Li DS, Xu H, Chen GX, Zhang CG (2009) Comparisons of different hypervariable regions of rrs genes for fingerprinting of microbial communities in paddy soils. Soil Biol Biochem 41:954–968

    CAS  Google Scholar 

  • Lin WR, Wang PH, Chen MC, Kuo YL, Chiang PN, Wang MK (2015) The impacts of thinning on the fruiting of saprophytic fungi in Cryptomeria japonica plantations in central Taiwan. For Ecol Manag 336:183–193

    Google Scholar 

  • Lin WR, Wang PH, Chen WC, Lai CM, Winder RS (2016) Responses of soil fungal population and community to the thinning of Cryptomeria japonica forests. Microbes Environ 31:19–26

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ludovici KH, Kress LW (2006) Decomposition and nutrient release from fresh and dried pine roots under two fertilizer regimes. Can J For Res 36:105–111

    CAS  Google Scholar 

  • Maassen S, Fritze H, Wirth S (2006) Response of soil microbial biomass, activities, and community structure at a pine stand in northeastern Germany 5 years after thinning. Can J For Res 36:1427–1434

    CAS  Google Scholar 

  • Mackay SJ (1977) Improved enumeration of Streptomyces spp. on a starch casein salt medium. Appl Environ Microbiol 33:227–230

    CAS  PubMed  PubMed Central  Google Scholar 

  • Meyer O (1994) Functional groups of microorganisms. In: Schultze ED, Mooney HA (eds) Biodiversity and ecosystem function. Springer, Berlin, pp 67–96

    Google Scholar 

  • Meyer AF, Lipson DA, Martin AP, Schadt CW, Schmidt SK (2004) Molecular and metabolic characterization of cold-tolerant alpine soil Pseudomonas sensu stricto. Appl Environ Microbiol 70:483–489

    CAS  PubMed  PubMed Central  Google Scholar 

  • Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003) Microbial diversity and soil functions. Eur J Soil Sci 54:655–670

    Google Scholar 

  • Ohashi M, Gyokusen K, Saito A (1999) Measurement of carbon dioxide evolution from a Japanese cedar (Cryptomeria japonica D. Don) forest floor using an open-flow chamber method. For Ecol Manag 123:105–114

    Google Scholar 

  • Rui JP, Peng JJ, Lu YH (2009) Succession of bacterial populations during plant residue decomposition in rice field soil. Appl Environ Microbiol 75:4879–4886

    CAS  PubMed  Google Scholar 

  • Schimel J (2016) Microbial ecology: linking omics to biogeochemistry. Nat Microbiol 1:15028

    CAS  PubMed  Google Scholar 

  • Smith NR, Kishchuk BE, Mohn WW (2008) Effects of wildfire and harvest disturbances on forest soil bacterial communities. Appl Environ Microbiol 74:216–224

    CAS  PubMed  Google Scholar 

  • Tortora GJ, Funke BR, Case CL (2007) Microbiology—an introduction. Pearson International Edition, California

  • Wang C, Xue L, Dong Y, Hou L, Wei Y, Jiao R (2019) Responses of soil microbial community structure to stand densities of Chinese fir plantations. J For Res 24:162–167

    CAS  Google Scholar 

  • Weng SH, Kuo SR, Guan BT, Chang TY, Hsu HW, Shen CW (2007) Microclimatic responses to different thinning intensities in a Japanese cedar plantation of northern Taiwan. For Ecol Manag 241:91–100

    Google Scholar 

  • Wu R, Cheng X, Han H (2019) The effect of forest thinning on soil microbial community structure and function. Forests 10:352

    CAS  Google Scholar 

  • Zhou Z, Wang C, Ren C, Sun Z (2020) Effects of thinning on soil saprotrophic and ectomycorrhizal fungi in a Korean larch plantation. For Ecol Manag 461:117920

    Google Scholar 

  • Zhuang SY, Chen YM, Wang MK, Kuo SR, Hwong JL, King HB (2005) Influences of forestry thinning on soil nitrogen mineralization and nitrification. Taiwan J For Sci 20:167–177 (in Chinese)

    CAS  Google Scholar 

  • Zumsteg A, Luster J, Göransson H, Smittenberg RH, Brunner I, Bernasconi SM, Zeyer J, Frey B (2012) Bacterial, archaeal and fungal succession in the forefield of a receding glacier. Microbial Ecol 63:552–564

    Google Scholar 

Download references

Acknowledgements

This project was supported by grants from the Taiwan Forestry Bureau, Taiwan (97-00-5-02, 98-00-5-31). We thank Dr. I-Fang Sun, Dr. Chih-Ming Chiu and Dr. Hen-Biao King for their role in setting up the dynamic plots; and Dr. Kuo-Ching Tzeng for his advice concerning Biolog.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Pi-Han Wang.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lin, WR., Chen, WC. & Wang, PH. Soil microbial community is resilient to thinning disturbance. Trop Ecol 64, 62–71 (2023). https://doi.org/10.1007/s42965-022-00243-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s42965-022-00243-z

Keywords

Navigation