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Soil fungal community variation by large-scale reclamation in Sanjiang plain, China

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Abstract

Large-scale marshland reclamation can cause substantial changes to the soil fungal community by disturbances associated with the growth of crop plants and by the addition of fertilizers and pesticides. In this study, high-throughput sequencing of the fungal-specific internal transcribed spacer (ITS) gene region was used to identify fungal taxa. We analyzed the variation in soil fungi diversity and community composition in marshland, paddy, and farmland corn soils, and investigated the relationship between soil fungal community composition and soil physicochemical characteristics to quantify the effect of large-scale reclamation on marshland soil environment in the Sanjiang Plain, northeast China. Marshland soil contained most of the 1997 operational taxonomic units (OTUs) found across all sites (1241), while paddy soil had only 614 OTUs and farmland corn soil 817 OTUs. All reclaimed lands presented a decline in richness and diversity of soil fungi at the OTU level, and soil fungal richness was significantly different between marshland and reclaimed sites (P < 0.05), although it did not differ significantly between marshland and farmland corn sites. Additionally, soil fungal community composition showed different trends and structure after the reclamation. One-way analysis of variance showed Basidiomycota, Zygomycota, Glomeromycota, and Chytridiomycota composition differed significantly between marshland and reclaimed sites (P < 0.05). Nine dominant genera (relative abundance >1.5% in at least one site) and many unclassified genera showed significant variation between marshland and reclaimed sites, including Blumeria, Tomentella, Peziza, Hypholoma, Zopfiella, Mrakia, and Fusarium. Soil fungal community composition and diversity were affected by soil moisture, pH, total carbon (C), available nitrogen (N), soil organic carbon, soil dissolved organic carbon, and C/N (the ratio of total carbon to total nitrogen). The present results contribute to understanding the fungal community in marshland ecosystems, and the role of environmental variability as a predictor of fungal community composition.

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References

  • Birkhofer K, Schöning I, Alt F, Herold N, Klarner B, Maraun M et al (2012) General relationships between abiotic soil properties and soil biota across spatial scales and different land-use types. PLoS One 7:e4s3292

    Article  Google Scholar 

  • Chen HH, Xu XH, Li HT (2012) Diversity analysis of soil fungal community structure in Sanjiang wetland by PCR-DGGE. Res Environ Sci 25:1272–1278

    CAS  Google Scholar 

  • Cookson WR, Murphy DV, Roper MM (2008) Characterizing the relationships between soil organic matter components and microbial function and composition along a tillage disturbance gradient. Soil Biol Biochem 40:763–777

    Article  CAS  Google Scholar 

  • Cortés-Lorenzo C, González-Martínez A, Smidt H, González-López J, Rodelas B (2014) Influence of salinity on fungal communities in a submerged fixed bed bioreactor for wastewater treatment. Chem Eng J 285:562–572

    Article  Google Scholar 

  • Franzosa EA, Hsu T, Sirota-Madi A, Shafquat A, Abu-Ali G, Morgan XC, Huttenhower C (2015) Sequencing and beyond: integrating molecular ‘omics’ for microbial community profiling. Nat Rev Microbiol 13(6):360–372

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gong C, Song CC, Tan WW, Zhang JS (2015) Effects of marshland reclamation on soil microbial properties in the Sanjiang plain, Northeast China. Ecol Environ Sci 24(6):972–977

    Google Scholar 

  • Hao QJ, Wang QC, Wang QC, Li ZB (2003) Preliminary study on total sulfur in typical marsh wetland and arable soils in Sanjiang plain. Chin J Appl Ecol 24(12):2191–2194

    Google Scholar 

  • Huang JY, Song CC, Song YY, Liu DY, Wan ZM, Liao YJ (2008) Influence of freshwater marsh tillage on microbial biomass and dissolved organic carbon and nitrogen. Environ Sci 29(5):1380–1387

    Google Scholar 

  • Huang Y, Long NX (2014) Contribution of fungi to soil nitrous oxide emission and their research methods: a review. Chin J Appl Ecol 25(4):1213–1220

    CAS  Google Scholar 

  • Huo LL, Zou YC, Guo JW, Lv XG (2013) Effect of reclamation on the vertical distribution of SOC and retention of DOC. Chin J Environ Sci 34(1):283–287

    Google Scholar 

  • Jansson JK, Prosser JI (2013) Microbiology: the life beneath our feet. Nature 494:40–41

    Article  CAS  PubMed  Google Scholar 

  • Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TS, Bengtsson-Palme J et al (2013) Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol 22:5271–5277

    Article  PubMed  Google Scholar 

  • Kong FL, Xi M, Lv XG, Zou YC, Li Y (2013) Spatial and temporal variation of dissolved organic carbon in soils of annular wetlands in Sanjiang plain, China. Acta Pedol Sin 50:211–216

    Google Scholar 

  • Li HN, Liu WX, Dai L, Wang FH, Cao YY (2009) Invasive impacts of Ageratina Adenophora(Asteraceae) on the changes of microbial community structure, enzyme activity and fertility in soil ecosystem. Sci Agric Sin 42:3964–3971

    CAS  Google Scholar 

  • Li YJ, Wang H, Zhao JN, Huang PCH, Yang DL (2015) Effects of tillage methods on soil physicochemical properties and biological characteristics in farmland. Chin J Appl Ecol 26:939–948

    CAS  Google Scholar 

  • Liu HX, Guo SX, Liu JR (2015) Characteristics of arbuscular mycorrhizal fungal diversity and functions in saline-alkali land. Chin J Appl Ecol 26(1):311–320

    Google Scholar 

  • Lin XG, Feng YZ, Chen RR, Chu HY (2012) Long-term balanced fertilization decreases Arbuscular Mycorrhizal fungal diversity in an arable soil in North China revealed by 454 pyrosequencing. Environ Sci Technol 46:5764–5771

    Article  CAS  PubMed  Google Scholar 

  • Ludwig-Müller J (2015) Bacteria and fungi controlling plant growth by manipulating auxin: balance between development and defense. J Plant Physiol 172:4–12

    Article  PubMed  Google Scholar 

  • Ríškováa AV, Janoušková M, Slavíková R, Pánková H, Daniel O, Vazacová K, Rydlová J, Vosátka M, Münzbergová Z (2016) Effect of past agricultural use on the infectivity and composition of a community of arbuscular mycorrhizal fungi. Agric Ecosyst Environ 221:28–39

    Article  Google Scholar 

  • Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340–1351

    Article  PubMed  Google Scholar 

  • Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6(12):e27310

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sheik CS, Mitchell TW, Rizvi FZ, Rehman Y, Faisal M, Hasnain S, McInerney MJ, Krumholz LR (2012) Exposure of soil microbial communities to chromium and arsenic alters their diversity and structure. PLoS One 7(6):e40059

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Song KS, Zhang B, Wang ZM, Duan HT (2005) Study on hyperstectral remote sensing estimation model for the corn LAI with canopy reflectance. Chin Agric Sci Bull 21:318–322

    Google Scholar 

  • Staddon WJ, Duchesne LC, Trevors JT (1997) Microbial diversity and community structure of Postdisturbance Forest soils as determined by sole-carbon-source utilization patterns. Microb Ecol 34:125–130

    Article  CAS  PubMed  Google Scholar 

  • Sun YN, Bao WK, Yu ML (2007) Determination of hydrolysable nitrogen content containing soils with automatic determination of nitrogen analyzer. Soil Fertil Sci China 5:64–66

    Google Scholar 

  • Tong SZ, Lv XG, Yang Q, Jiang M, Liu JP (2005) Progress and prospect in wetland research of Sanjiang plain. Resour Sci 27(6):180–187

    Google Scholar 

  • Wang F, Bau T (2014) Research advances in the diversity of soil fungi. J Fungal Res 12(3):178–186

    Google Scholar 

  • Wang LL, Song CC, Ge RJ, Song YY, Liu DY (2009) Soil organic carbon storage under different land-use types in Sanjiang plain. China Environ Sci 29(6):656–660

    CAS  Google Scholar 

  • Wang M, Shi S, Lin F, Jiang P (2014) Response of the soil fungal community to multi-factor environmental changes in a temperate forest. Appl Soil Ecol 81:45–56

    Article  Google Scholar 

  • Wang QH, Ren YF, Meng L, Li H, Fu HM, Wang HF (2013) Simultaneous determination of total nitrogen and organic carbon in soil with an elemental analyzer. Chin J Anal Labor 32:41–45

    Google Scholar 

  • Wang Y, Li J, Cao ZP, Yang HF (2014) Effects of long-term fertilization on soil fungi. Chin J Eco-Agric 22(11):1267–1273

    Google Scholar 

  • Wang ZM, Song KS, Liu DW, Zhang B, Zhang SQ, Li F, Ren CY, Jin C, Yang T, Zhang CH (2009) Process of land conversion from marsh into cropland in the Sanjiang plain during 1954-2005. Wetland Sci 7(3):208–216

    Google Scholar 

  • Xiao Y, Huang ZG, Wu HT, Lv XG (2014) Carbon and nitrogen distributions and microbial characteristics in the soils of four types of wetlands in Sanjiang plain, Northeast China. Chin J Appl Ecol 25:2847–2854

    CAS  Google Scholar 

  • Xu F, Cai TJ, Yang X, Ju CY, Tang QM (2016) Effect of cultivation and natural restoration on soil bacterial community diversity in marshland in the Sanjiang plain. Acta Ecol Sin 26(22):7412–7421

    Google Scholar 

  • Yu ZH, Wang GH, Jin J, Liu JD, Liu XB (2011) Soil microbial communities are affected more by land use than seasonal variation in restored grassland and cultivated Mollisols in Northeast China. Eur J Soil Biol 47:357–363

    Article  Google Scholar 

  • Zhang NL, Guo JX, Wang XY, Ma KP (2007) Soil microbial feedbacks to climate warming and atmospheric N deposition. J Plant Ecol 31(2):252–261

    Article  CAS  Google Scholar 

  • Zhang T, Wang NF, Zhang YQ, Liu HY, Yu LY (2015a) Diversity and distribution of fungal communities in the marine sediments of Kongsfjorden, Svalbard (high Arctic). Sci Rep 5:14524

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang T, Wei XL, Zhang YQ, Liu HY, Yu LY (2015b) Diversity and distribution of lichen-associated fungi in the Ny-Ålesun region (Svalbard, high Arctic) as revealed by 454 pyrosequencing. Sci Rep 5:14850

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang YH, Ni J, Tang FP, Pei KQ, Luo YQ, Jiang LF, Sun LF, Liang Y (2016) Root-associated fungi of Vaccinium carlesii in subtropical forests of China: intra- and inter-annual variability and impacts of human disturbances. Sci Rep 6:22399

  • Zou L, Yu Y, Sun TT, Tang QM, Guo J, Zhang GQ, Ren QZ (2014) Analysis of relationship between soil microbial biomass dynamics and soil physicochemical properties of primary Korean pine Forest in China. Pratacultural science 31(1):15–21

    CAS  Google Scholar 

  • Zhao Y, Li FM, Wang HY, Li Y, Zhang MQ, Wang ZY (2011) The relationship between microbial diversity and water purification capacity in aerobic /anaerobic subsurface flow constructed wetland. Acta Sci Circumst 31(11):2423–2431

    CAS  Google Scholar 

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Xu, F., Cai, T., Yang, X. et al. Soil fungal community variation by large-scale reclamation in Sanjiang plain, China. Ann Microbiol 67, 679–689 (2017). https://doi.org/10.1007/s13213-017-1296-9

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  • DOI: https://doi.org/10.1007/s13213-017-1296-9

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