References
Aerts R (2002) The role of various types of mycorrhizal fungi in nutrient cycling and plant competition. In: Van der Heijden MGA, Sanders IR (eds) Mycorrhizal Ecology, Ecological Studies 157. Springer, Berlin, pp 117–133
Abuzinadah RA, Read DJ (1988) Amino acids as nitrogen sources for ectomycorrhizal fungi: utilization of individual amino acids. T Brit Mycol Soc 91:473–479
Agerer R (1991) Studies on ectomycorrhizae XXXIV. Mycorrhizae of Gomphidius glutinosus and of G. roseus with some remarks on Gomphidiaceae (Basidiomycetes). Nova Hedwigia 53:127–170
Agrios GN (2005) Plant Pathology. Elsevier Press, Amsterdam
Alexander T, Toth R, Meier R, Weber HC (1989) Dynamics of arbuscule development and degeneration in onion, bean, and tomato with reference to vesicular-arbuscular mycorrhizae in grasses. Can J Bot 67:2505–2513
Asiegbu FO, Adomas A, Stenlid J (2005) Conifer root and butt rot caused by Heterobasidion annosum (Fr.) Bref. s.l. Mol Plant Pathol 6:395–409
Asiegbu FO, Daniel G, Johansson M (1993) Studies on the infection of Norway spruce roots by Heterobasidion annosum. Can J Bot 71:1552–1561
Azcón-Aguilar C, Barea JM (1995) Saprophytic growth of arbuscular mycorrhizal fungi. In: Varma A (ed) Mycorrhiza. Springer-Verlag, New York, pp 391–407
Bago B, Pfeffer PE, Shachar-Hill Y (2000) Carbon metabolism and transport in arbuscular mycorrhizas. Plant Physiol 124:949–958
Baldrian P, Voříšková J, Dobiášová P, Merhautová V, Lisá L, Valášková V (2011) Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil. Plant Soil 338:111–125
Barnett HL, Binder FL (1973) The fungal host-parasite relationship. Annu Rev Phytopathol 11:273–292
Barrow JR, Osuna P (2002) Phosphorus solubilization and uptake by dark septate fungi in fourwing saltbush, Atriplex canescens (Pursh) Nutt. J Arid Environ 51:449–459
Baumgartner K, Coetzee M, Hoffmeister D (2011) Secrets of the subterranean pathosystem of Armillaria. Mol Plant Pathol 12:515–534
Bertin C, Yang X, Weston LA (2003) The role of root exudates and allelochemicals in the rhizosphere. Soil 256:67–83
Broeckling CD, Broz AK, Bergelson J, Manter DK, Vivanco JM (2008) Root exudates regulate soil fungal community composition and diversity. Appl Environ Microb 74:738–744
Brundrett M (2004) Diversity and classification of mycorrhizal associations. Biol Rev 79:473–495
Brundrett M (2006) Understanding the roles of multifunctional mycorrhizal and endophytic fungi. In: Schulz B, Boyle C, Sieber TN (eds) Microbial root endophytes. Springer, Berlin, pp 281–293
Brunner I, Bakker MR, Björk RG, Hirano Y, Lukac M, Aranda X et al (2013) Fine-root turnover rates of European forests revisited: an analysis of data from sequential coring and ingrowth cores. Plant Soil 362:357–372
Buée M, de Boer W, Martin F, Van Overbeek L, Jurkevitch E (2009) The rhizosphere zoo: an overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors. Plant Soil 189–212
Buyer JS, Roberts DP, Russek-Cohen E (2002) Soil and plant effects on microbial community structure. J Microbiol 48:955–964
Caffall KH, Mohnen D (2009) The structure, function, and biosynthesis of plant cell wall pectic polysaccharides. Carbohyd Res 344:1879–1900
Cairney JWG, Burke RM (1994) Fungal enzymes degrading plant cell walls: their possible significance in the ectomycorrhizal symbiosis. Mycol Res 98:1345–1356
Caldwell BA, Jumpponen A, Trappe JM (2000) Utilization of major detrital substrates by dark-septate, root endophytes. Mycologia 92:230–232
Carpita NC, Gibeaut DM (1993) Structural models of primary cell walls in flowering plants: Consistency of molecular structure with the physical properties of the walls during growth. Plant J 3:1–30
Cázares E, Trappe J (1993) Vesicular endophytes in the roots of the Pinaceae. Mycorrhiza 2:153–156
Cázares E, Smith JE (1996) Occurrence of vesicular-arbuscular mycorrhizae in Pseudotsuga menziesii and Tsuga heterophylla seedlings grown in Oregon Coast Range soils. Mycorrhiza 6:65–67
Chen YL, Brundrett MC, Dell B (2000) Effects of ectomycorrhizas and vesicular–arbuscular mycorrhizas, alone or in competition, on root colonization and growth of Eucalyptus globulus and E. urophylla. New Phytol 146:545–555
Daniel G, Asiegbu F, Johansson M (1998) The saprotrophic wood-degrading abilities of Heterobasidium annosum intersterility groups P and S. Mycol Res 102:991–997
Deacon JW (1996) Ecological implications of recognition events in the pre-infection stages of root pathogens. New Phytol 133:135–145
De Boer WD, Folman LB, Summerbell RC, Boddy L (2005) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29:795–811
Domsch KH, Gams W, Anderson TH (1993) Compendium of Soil Fungi, vol 1. IHW-Verlag, Eching
Downes GM, Alexander IJ, Cairney JWG (1992) A study of ageing of spruce [Picea sitchensis (Bong.) Carr.] ectomycorrhizas. I. Morphological and cellular changes in mycorrhizas formed by Tylospora fibrillosa (Burt.) Donk and Paxillus involutus (Batsch. ex Fr.) Fr. New Phytol 122:141–152
Dunaevsky YE, Gruban TN, Belyakova GA, Belozersky MA (2006) Extracellular proteinases of filamentous fungi as potential markers of phytopathogenesis. Microbiology 75:649–652
Egger KN (1986) Substrate hydrolysis patterns of post-fire Ascomycetes (Pezizales). Mycologia 78:771–780
Egger KN (2006) The surprising diversity of ascomycetous mycorrhizas. New Phytol 170:421–423
Eissenstat DM, Yanai RD (2002) Root life span, efficiency, and turnover. In: Waisel Y, Eshel A, Kafkafi U (eds) Plant roots: the hidden half. Marcel Dekker, New York, pp 221–238
Erland S, Mahmood S, Jonsson T, Finlay RD (1999) Below-ground ectomycorrhizal community structure in two Picea abies forests in Southern Sweden. Scand J For Res 14:193–198
Fernandez CW, McCormack ML, Hill JM, Pritchard SG, Koide RT (2013) On the persistence of Cenococcum geophilum ectomycorrhizas and its implications for forest carbon and nutrient cycles. Soil Biol Biochem 65:141–143
Fisk MC, Fahey TJ, Sobieraj JH, Staniec AC, Crist TO (2011) Rhizosphere disturbance influences fungal colonization and community development on dead fine roots. Plant Soil 341:279–293
Fogel R (1988) Interactions among soil biota in coniferous ecosystems. Agr Ecosyst Environ 24:69–85
Fogel R, Hunt G (1983) Contribution of mycorrhizae and soil fungi to nutrient cycling in a Douglas-fir ecosystem. Can J For Res 13:219–232
Foster RC, Marks GC (1967) Observations on the mycorrhizas of forest trees. II. The rhizosphere of Pinus radiata D. Don. Aust J Biol Sci 20:915–926
Gams W, Diederich P, Poldmaa K (2011) Fungicolous Fungi. In: Foster MS, Bills GF (eds) Biodiversity of Fungi: Inventory and Monitoring Methods. Academic Press, pp 343–394
Gardes M, Dahlberg A (1996) Mycorrhizal diversity in arctic and alpine tundra: an open question. New Phytol 133:147–157
Garrett SD (1970) Pathogenic root-infecting fungi. Cambridge University Press
Girlanda M, Luppi Mosca AM (1995) Microfungi associated with ectomycorrhizae of Pinus halepensis Mill. Allionia 33:93–98
Glazebrook J (2005) Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu Rev Phytopathol 43:205–227
Golubtsova YV, Glushakova AM, Chernov IY (2007) The seasonal dynamics of yeast communities in the rhizosphere of soddy-podzolic soils. Eurasian Soil Sci 40:875–879
Goud JC (2003) Verticillium wilt in trees. Detection, prediction and disease management. Ph.D. thesis, Wageningen Universiteit, Wageningen, Netherlands
Govrin EM, Levine A (2000) The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea. Curr Biol 10:751–757
Gravel D, Canham CD, Beaudet M, Messier C (2006) Reconciling niche and neutrality: the continuum hypothesis. Ecol Lett 9:399–409
Grayston SJ, Vaughan D, Jones D (1996) Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability. Appl Soil Ecol 5:29–56
Grayston SJ, Wang S, Campbell CD, Edwards AC (1998) Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem 30:369–378
Grelet GA, Johnson D, Vrålstad T, Alexander IJ, Anderson IC (2010) New insights into the mycorrhizal Rhizoscyphus ericae aggregate: spatial structure and co-colonization of ectomycorrhizal and ericoid roots. New Phytol 188:210–222
Gruber S, Seidl-Seiboth V (2012) Self versus non-self: fungal cell wall degradation in Trichoderma. Microbiology 158:26–34
Hadacek F, Kraus GF (2002) Plant root carbohydrates affect growth behaviour of endophytic microfungi. FEMS Microbial Ecol 41:161–170
Hansen EM, Goheen DJ, Hessburd PF, Witchosky JJ, Schowalter TD (1988) Biology and management of black stain root disease in Douglas fir. In: Cobb FW (ed) Harrington TC. Leptographium root disease in conifers. American Phytopathological Society, St Paul, pp 63–80
Hanson CA, Allison SD, Bradford MA, Wallenstein MD, Treseder KK (2008) Fungal taxa target different carbon sources in forest soil. Ecosystems 11:1157–1167
Harley JL, Waid JS (1955) A method of studying active mycelia on living roots and other surfaces in the soil. T Brit Mycol Soc 38:104–118
Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma spp. : Opportunistic avirulent plant symbionts. Nature Rev Microbiol 2:43–56
Hietala AM (1997) The mode of infection of pathogenic uninucleate Rhizoctonia sp. in conifer seedling roots. Can J For Res 27:471–480
Hobbie EA (2006) Carbon allocation to ectomycorrhizal fungi correlates with belowground allocation in culture studies. Ecology 87:563–569
Hodge A, Fitter AH (2010) Substantial nitrogen acquisition by arbuscular mycorrhizal fungi from organic material has implications for N cycling. Proc Natl Acad Sci U S A 107:13754–13759
Horton TR, Cázares E, Bruns TD (1998) Ectomycorrhizal, vesicular-arbuscular and dark septate fungal colonization of bishop pine (Pinus muricata) seedlings in the first 5 months of growth after wildfire. Mycorrhiza 8:11–18
Howell CR (1982) Effect of Gliocladium virens on Pythium ultimum, Rhizoctonia solani, and damping-off of cotton seedlings. Phytopathology 72:496–498
Howell CR (2003) Mechanisms employed by Trichoderma species in the biological control of plant diseases: the history and evolution of current concepts. Plant Dis 87:4–10
Howlett BJ (2006) Secondary metabolite toxins and nutrition of plant pathogenic fungi. Curr Opin Plant Biol 9:371–375
Hubbell SP (2001) The unified neutral theory of biodiversity and biogeography. Princeton University Press, NJ
Husband R, Herre EA, Turner SL, Gallery R, Young JPW (2002) Molecular diversity of arbuscular mycorrhizal fungi and patterns of host association over time and space in a tropical forest. Mol Ecol 11:2669–2678
Izumi H, Finlay RD (2011) Ectomycorrhizal roots select distinctive bacterial and ascomycete communities in Swedish subarctic forests. Environ Microbiol 13:819–830
Jahangeer S, Khan N, Jahangeer S, Sohail M, Shahzad S, Ahmad A, Khan SA (2005) Screening and characterization of fungal cellulases isolated from the native environmental source. Pakistan J Bot 37:739–748
Jeffries P (1995) Biology and ecology of mycoparasitism. Can J Bot 73(S1):1284–1290
Jeffries P, Young TWK (1994) Interfungal parasitic relationships. CAB International, Wallingford
Jin H, Pfeffer PE, Douds DD, Piotrowski E, Lammers PJ, Shachar-Hill Y (2005) The uptake, metabolism, transport and transfer of nitrogen in an arbuscular mycorrhizal symbiosis. New Phytol 168:687–696
Joergensen RG (2000) Ergosterol and microbial biomass in the rhizosphere of grassland soils. Soil Biol Biochem 32:647–652
Johnson NC, Graham H, Smith FA (1997) Functioning of mycorrhizal associations along the mutualism - parasitism continuum. New Phytol 135:575–585
Jones DL, Nguyen C, Finlay RD (2009) Carbon flow in the rhizosphere: carbon trading at the soil–root interface. Plant Soil 321:5–33
Jumpponen A (2001) Dark septate endophytes–are they mycorrhizal? Mycorrhiza 11:207–211
Jumpponen A, Trappe JM (1998) Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. New Phytol 140:295–310
Jumpponen A, Jones KL, Mattox JD, Yaege C (2010) Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Mol Ecol 19:41–53
Kernaghan G (2005) Mycorrhizal diversity: Cause and effect? Pedobiologia 49:511–520
Kernaghan G, Patriquin G (2011) Host associations between fungal root endophytes and boreal trees. Microbial Ecol 62:460–473
Kivlin SN, Hawkes CV, Treseder KK (2011) Global diversity and distribution of arbuscular mycorrhizal fungi. Soil Biol Biochem 43:2294–2303
Koide RT, Sharda JN, Herr JR, Malcolm GM (2008) Ectomycorrhizal fungi and the biotrophy–saprotrophy continuum. New Phytol 178:230–233
Kwaśna H, Łakomy P, Mallett K (2004) Reaction of Armillaria ostoyae to forest soil microfungi. Forest Pathol 34:147–162
Kytöviita MM, Ruotsalainen AL (2007) Mycorrhizal benefit in two low arctic herbs increases with increasing temperature. Am J Bot 94:1309–1315
Lam CK, Belanger FC, White JF, Daie J (1994) Mechanism and rate of sugar uptake by Acremonium typhinum, an endophytic fungus infecting Festuca rubra: evidence for presence of a cell wall invertase in endophytic fungi. Mycologia 86:408–415
Lapeyrie FF, Chilvers GA (1985) An endomycorrhiza-ectomycorrhiza succession associated with enhanced growth of Eucalyptus dumosa seedlings planted in a calcareous soil. New Phytol 100:93–104
Latgé JP (2007) The cell wall: a carbohydrate armour for the fungal cell. Mol Microbiol 66:279–290
Leibold MA, McPeek MA (2006) Coexistence of the niche and neutral perspectives in community ecology. Ecology 87:1399–1410
Lilja A, Rikala R (2000) Effect of uninucleate Rhizoctonia on Scots pine and Norway spruce seedlings. Forest Pathol 30:109–115
Lindahl BD, Finlay RD, Cairney J (2005) Enzymatic activities of mycelia in mycorrhizal fungal communities. In: Dighton J, White JF Jr, Oudemans P (eds) The fungal community: its organization and role in the ecosystem. CRC Press, Boca Raton, pp 331–348
Lodge DJ (1989) The influence of soil moisture and flooding on formation of VA-endo- and ectomycorrhizae in Populus and Salix. Plant Soil 117:255–262
Lodge DJ, Wentworth TR (1990) Negative associations among VA-mycorrhizal fungi and some ectomycorrhizal fungi inhabiting the same root system. Oikos 57:347–356
Lynch JM (1990) Introduction: some consequences of microbial rhizosphere competence for plant and soil. In: Lynch JM (ed) The Rhizosphere. Wiley, Chichester, pp 1–10
Mandyam K, Jumpponen A (2005) Seeking the elusive function of the root-colonising dark septate endophytic fungi. Stud Mycol 53:173–189
Mandyam K, Loughin T, Jumpponen A (2010) Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia 102:813–821
Manocha MS, Lee KY (1971) Host-parasite relations in mycoparasite. I. Fine structure of host, parasite, and their interface. Can J Bot 49:1677–1681
Marschner H, Dell B (1994) Nutrient uptake in mycorrhizal symbiosis. Plant Soil 159:89–102
Marschner P, Crowley D, Yang CH (2004) Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant Soil 261:199–208
Mayerhofer MS, Kernaghan G, Harper KA (2013) The effects of fungal root endophytes on plant growth: a meta-analysis. Mycorrhiza 23:119–128
McCormack ML, Eissenstat DM, Prasad AM, Smithwick EA (2013) Regional scale patterns of fine root lifespan and turnover under current and future climate. Glob Change Biol 19:1697–1708
Menkis A, Allmer J, Vasiliauskas R, Lygis V, Stenlid J, Finlay R (2004) Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris. Mycol Res 108:965–973
Mims CW, Sewall TC, Richardson EA (2000) Ultrastructure of the host-pathogen relationship in Entomosporium leaf spot disease of Photinia. Int J Plant Sci 161:291–295
Misbahuzzaman K, Newton A (2006) Effect of dual arbuscular-ectomycorrhizal inoculation on mycorrhiza formation and growth in E. camaldulensis Dehnh. seedlings under different nutrient regimes. Int J Agr Biol 8:848–854
Molina R, Massicotte H, Trappe JM (1992) Specificity phenomena in mycorrhizal symbioses: community-ecological consequences and practical implications. In: Allen MF (ed) Mycorrhizal functioning: An integrative plant-fungal process. Chapman and Hall, New York, pp 357–423
Molina R, Trappe JM (1982) Lack of mycorrhizal specificity by the ericaceous hosts Arbutus menziesii and Arctostaphylos uva-ursi. New Phytol 90:495–509
Mosca AML, Marchisio VF (1985) Mycorrhizoplane fungal populations of Abies alba seedlings. Allionia 27:30–39
Mougel C, Offre P, Ranjard L, Corberand T, Gamalero E, Robin C, Lemanceau P (2006) Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong line J5. New Phytol 170:165–175
Moyersoen B, Fitter AH (1999) Presence of arbuscular mycorrhizas in typically ectomycorrhizal host species from Cameroon and New Zealand. Mycorrhiza 8:247–253
Müller MM, Valjakka R, Suokko A, Hantula J (2001) Diversity of endophytic fungi of single Norway spruce needles and their role as pioneer decomposers. Mol Ecol 10:1801–1810
Nagendran S, Hallen-Adams HE, Aslam N, Walton JD (2009) Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei. Fungal Genet Biol 46:427–435
Neal JL, Bollen WB, Zak B (1964) Rhizosphere microflora associated with mycorrhizae of Douglas fir. Can J Microbiol 10:259–265
Nehls U, Grunze N, Willmann M, Reich M, Kuester H (2007) Sugar for my honey: carbohydrate partitioning in ectomycorrhizal symbiosis. Phytochemistry 68:82–91
Nehls U, Göhringer F, Wittulsky S, Dietz S (2010) Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review. Plant Biol 12:292–301
Neville J, Tessier JL, Morrison I, Scarratt J, Canning B, Klironomos JN (2002) Soil depth distribution of ecto- and arbuscular mycorrhizal fungi associated with Populus tremuloides within a 3-year-old boreal forest clear-cut. Appl Soil Ecol 19:209–216
Newman EI (1985) The rhizosphere: carbon sources and microbial populations. In: Fitter AH, Atkinson D, Read DJ, Usher MB (eds) Ecological Interactions in Soil. Br. Ecol Spec Publ 4 pp 107–121
Newsham KK (2011) A meta-analysis of plant responses to dark septate root endophytes. New Phytol 190:783–793
Nguyen C (2003) Rhizodeposition of organic C by plants: mechanisms and controls. Agronomie 23:375–396
Olsson PA, Münzenberger B, Mahmood S, Erland S (2000) Molecular and anatomical evidence for a three-way association between Pinus sylvestris and the ectomycorrhizal fungi Suillus bovinus and Gomphidius roseus. Mycol Res 104:1372–1378
Öpik M, Metsis M, Daniell TJ, Zobel M, Moora M (2009) Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytol 184:424–437
Parfitt D, Hunt J, Dockrell D, Rogers HJ, Boddy L (2010) Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees. Fungal Ecol 3:338–346
Parkinson D, Thomas A (1969) Studies on fungi in the root region. Plant Soil 31:299–310
Parrent JL, James TY, Vasaitis R, Taylor AF (2009) Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity in fungi and its implications for plant-fungal symbioses. BMC evolutionary biology 9:148. doi:10.1186/1471-2148-9-148
Paulitz TC, Menge JA (1986) The effects of a mycoparasite on the mycorrhizal fungus, Glomus deserticola. Phytopathology 76:351–354
Paulitz TC, Linderman RG (1991) Lack of antagonism between the biocontrol agent Gliocladium virens* and vesicular arbuscular mycorrhizal fungi. New Phytol 117:303–308
Perez-Naranjo JC (2009) Dark septate and arbuscular mycorrhizal fungal endophytes in roots of prairie grasses. Ph.D. Thesis, Dept. of Soil Science, University of Saskatchewan, Saskatoon, Saskatchewan
Peterson RL, Massicotte HB, Melville LH (2004) Mycorrhizas: Anatomy and Cell Biology. NRC Research Press, Ottawa
Pintye A, Bereczky Z, Kovács GM, Nagy LG, Xu X, Legler SE, Váczy KZ, Caffi T, Rossi V, Kiss L (2012) No indication of strict host associations in a widespread mycoparasite: Grapevine powdery mildew (Erysiphe necator) is attacked by phylogenetically distant Ampelomyces strains in the field. Phytopathology 102:707–716
Raaijmakers J, Paulitz T, Steinberg C, Alabouvette C, Moënne-Loccoz Y (2009) The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms. Plant Soil 321:341–361
Read DJ (1991) Mycorrhizas in ecosystems. Experientia 47:376–391
Redfern DB, Filip GM (1991) Inoculum and infection. In: Shaw CG III, Kile GA (eds) Armillaria Root Disease Agriculture Handbook No. 691. United States Department of Agriculture Forest Service, Washington, DC, pp 48–61
Reignault P, Valette-Collet O, Boccara M (2008) The importance of fungal pectinolytic enzymes in plant invasion, host adaptability and symptom type. Eur J Plant Pathol 120:1–11
Reininger V, Sieber TN (2012) Mycorrhiza reduces adverse effects of dark septate endophytes (DSE) on growth of conifers. PLoS ONE 7:e42865. doi:10.1371/journal.pone.0042865
Rice AV, Currah RS (2006) Oidiodendron maius: Saprobe in sphagnum peat, mutualist in ericaceous roots? In: Schulz B, Boyle C, Sieber TN (eds) Microbial root endophytes. Springer, Berlin, pp 227–246
Rousseau A, Benhamou N, Chet I, Piché Y (1996) Mycoparasitism of the extramatrical phase of Glomus intraradices by Trichoderma harzianum. Phytopathology 86:434–443
Rovira AD (1956) Plant root excretions in relation to the rhizosphere effect. Plant Soil 7:178–194
Ruiz-Lozano JM, Azcón R, Gomez M (1995) Effects of arbuscular-mycorrhizal glomus species on drought tolerance: physiological and nutritional plant responses. Appl Environ Microb 61:456–460
Salt GA (1977) The incidence of root-surface fungi on naturally regenerated Picea sitchensis seedlings in southeast Alaska. Forestry 50:113–115
Schaarschmidt S, Roitsch T, Hause B (2006) Arbuscular mycorrhiza induces gene expression of the apoplastic invertase LIN6 in tomato (Lycopersicon esculentum) roots. J Exp Bot 57:4015–4023
Scheller HV, Ulvskov P (2010) Hemicelluloses. Annu Rev Plant Biol 61:263–289
Schenck NC, Nicolson TH (1977) A zoosporic fungus occurring on species of Gigaspora margarita and other vesicular-arbuscular mycorrhizal fungi. Mycologia 69:1049–1053
Schoener TW (1974) Resource partitioning in ecological communities. Science 185:27–39
Schulz B, Boyle C (2005) The endophytic continuum. Mycol Res 109:661–686
Schulz B, Boyle C (2006) What are endophytes? In: Schulz B, Boyle C, Sieber TN (eds) Microbial root endophytes. Springer, Berlin, pp 1–13
Seiber TN (2002) Fungal root endophytes. In: Wasel Y, Eshel A, Kafkafi U (eds) Plant roots: the hidden half. Marcel Dekker, New York, pp 887–917
Shearer CA (1995) Fungal competition. Can J Bot 73(S1):1259–1264
Smith WH (1969) Germination of Macrophomina phaseoli sclerotia as effected by Pinus lambertiana root exudate. Can J Microbiol 15:1387–1391
Smith SE, Read DJ (2008) Mycorrhizal Symbiosis. Academic Press, New York
Stone JK (1987) Initiation and development of latent infections by Rhabdocline parkeri on Douglas-fir. Can J Bot 65:2614–2621
Straker CJ, Schnippenkoetter WH, Lemoine MC (1992) Analysis of acid invertase and comparison with acid phosphatase in the ericoid mycorrhizal fungus Hymenoscyphus ericae (Read) Korf and Kernan. Mycorrhiza 2:63–67
Summerbell RC (1987) The inhibitory effect of Trichoderma species and other soil microfungi on formation of mycorrhiza by Laccaria bicolor in vitro. New Phytol 105:437–448
Summerbell RC (1989) Microfungi associated with the mycorrhizal mantle and adjacent microhabitats within the rhizosphere of black spruce. Can J Bot 67:1085–1095
Summerbell RC (2005) Root endophyte and mycorrhizosphere fungi of black spruce, Picea mariana, in a boreal forest habitat: influence of site factors on fungal distributions. Stud Mycol 53:121–145
Sylvia DM, Schenck NC (1983) Soil fungicides for controlling chytridiaceous mycoparasites of Gigaspora margarita and Glomus fasciculatum. Appl Environ Microb 45:1306–1309
Talbot JM, Bruns TD, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Peay KG (2012) Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biol Biochem 57:282–291
Taylor AFS, Alexander I (2005) The ectomycorrhizal symbiosis: life in the real world. Mycologist 19:102–112
Tedersoo L, May TW, Smith ME (2010) Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. Mycorrhiza 20:217–263
Tedersoo L, Pärtel K, Jairus T, Gates G, Põldmaa K, Tamm H (2009) Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to the Helotiales. Environ Microbiol 11:3166–3178
Tellenbach C, Grünig CR, Sieber TN (2011) Negative effects on survival and performance of Norway spruce seedlings colonized by dark septate root endophytes are primarily isolate-dependent. Environ Microbiol 13:2508–2517
Toju H, Yamamoto S, Sato H, Tanabe AS, Gilbert GS, Kadowaki K (2013) Community composition of root associated fungi in a Quercus dominated temperate forest:“codominance” of mycorrhizal and root endophytic fungi. Ecol Evol 3:1281–1293
Tribak M, Ocampo JA, García-Romera I (2002) Production of xyloglucanolytic enzymes by Trichoderma viride, Paecilomyces farinosus, Wardomyces inflatus, and Pleurotus ostreatus. Mycologia 94:404–410
Turner IM (2001) The ecology of trees in the tropical rain forest. Cambridge Tropical Biology Series. Cambridge University Press, Cambridge
Unestam T, Beyer-Ericson L, Strand M (1989) Involvement of Cylindrocarpon destructans in root death of Pinus sylvestris seedlings: pathogenic behaviour and predisposing factors. Scand J For Res 4:521–535
Upson R, Read DJ, Newsham KK (2009) Nitrogen form influences the response of Deschampsia antarctica to dark septate root endophytes. Mycorrhiza 20:1–11
Uren NC (2001) Types, amounts, and possible functions of compounds released into the rhizosphere by soil-grown plants. In: Pinton R, Varanini Z, Nannipieri P (eds) The Rhizosphere: biochemistry and organic substances at the soil-plant interface. Marcel Dekker, New York, pp 19–39
Usuki F, Narisawa K (2007) A mutualistic symbiosis between a dark septate endophytic fungus, Heteroconium chaetospira, and a nonmycorrhizal plant, Chinese cabbage. Mycologia 99:175–184
Vance CP, Kirk TK, Sherwood RT (1980) Lignification as a mechanism of disease resistance. Annu Rev Phytopathol 18:259–288
Van Den Boogert PHJF (1989) Nutritional requirements of the mycoparasitic fungus Verticillium biguttatum. Neth J Plant Pathol 95:149–156
Vandenkoornhuyse P, Husband R, Daniell TJ, Watson IJ, Duck M, Fitter AH, Young JPW (2002) Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem. Mol Ecol 11:1555–1564
Vogt KA, Grier CC, Meier CE, Edmonds RL (1982) Mycorrhizal role in net primary production and nutrient cycling in Abies Amabilis ecosystems in Western Washington. Ecology 63:370–380
Vogt KA, Vogt DJ, Palmiotto PA, Boon P, O’Hara J, Asbjornsen H (1996) Review of root dynamics in forest ecosystems grouped by climate, climatic forest type and species. Plant Soil 187:159–219
Vohník M, Mrnka L, Lukešová T, Bruzone MC, Kohout P, Fehrer J (2013) The cultivable endophytic community of Norway spruce ectomycorrhizas from microhabitats lacking ericaceous hosts is dominated by ericoid mycorrhizal Meliniomyces variabilis. Fungal Ecol 6:281–292
Vujanovic V, Hamelin RC, Bernier L, Vujanovic G, St-Arnaud M (2007) Fungal diversity, dominance, and community structure in the rhizosphere of clonal Picea marina plants throughout nursery production chronosequences. Microbial Ecol 54:672–684
Wichern F, Eberhardt E, Mayer J, Joergensen RG, Müller T (2008) Nitrogen rhizodeposition in agricultural crops: methods, estimates and future prospects. Soil Biol Biochem 40:30–48
Whipps JM (2004) Prospects and limitations for mycorrhizas in biocontrol of root pathogens. Can J Bot 82:1198–1227
Whiteside MD, Digman MA, Gratton E, Treseder KK (2012) Organic nitrogen uptake by arbuscular mycorrhizal fungi in a boreal forest. Soil Biol Biochem 55:7–13
Wilcox HE (1983) Fungal parasitism of woody plant roots from mycorrhizal relationships to plant disease. Annu Rev Phytopathol 21:221–242
Wilcox HE, Wang CJK (1987) Mycorrhizal and pathological associations of dematiaceous fungi in roots of 7-month-old tree seedlings. Can J For Res 17:884–899
Yadeta KA, Thomma BP (2013) The xylem as battleground for plant hosts and vascular wilt pathogens. Front Plant Sci 4. doi:10.3389/fpls.2013.00097
Yoshida N, Fukushima T, Saito H, Shimosaka M, Okazaki M (1989) Cellulose and xylan degrading enzymes of the plant pathogenic fungus, Fusarium oxysporum SUF850. Agric Biol Chem 53:1829–1836
Yu TEJ, Egger KN, Peterson RL (2001) Ectendomycorrhizal associations–characteristics and functions. Mycorrhiza 11:167–177
Zhong C, Zhang Y, Chen Y, Jiang Q, Chen Z, Liang J, Pinyopusarerk K, Franche C, Bogusz D (2010) Casuarina research and applications in China. Symbiosis 50:107–114
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Kernaghan, G. Functional diversity and resource partitioning in fungi associated with the fine feeder roots of forest trees. Symbiosis 61, 113–123 (2013). https://doi.org/10.1007/s13199-013-0265-8
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DOI: https://doi.org/10.1007/s13199-013-0265-8