Abstract
Primary cilia are ubiquitous hair-like organelles, usually projecting from the cell surface. They are essential for the organogenesis and homeostasis of various physiological functions, and their dysfunction leads to a plethora of human diseases. However, there are few reports on the role of primary cilia in the immune system; therefore, we focused on their role in the thymus that nurtures immature lymphocytes to full-fledged T cells. We detected primary cilia on the thymic epithelial cell (TEC) expressing transforming growth factor β (TGF-β) receptor in the basal body, and established a line of an intraflagellar transport protein 88 (Ift88) knockout mice lacking primary cilia in TECs (Ift88-TEC null mutant) to clarify their precise role in thymic organogenesis and T-cell differentiation. The Ift88-TEC null mutant mice showed stunted cilia or lack of cilia in TECs. The intercellular contact between T cells and the “thymic synapse” of medullary TECs was slightly disorganized in Ift88-TEC null mutants. Notably, the CD4- and CD8-single positive thymocyte subsets increased significantly. The absence or disorganization of thymic cilia downregulated the TGF-β signaling cascade, increasing the number of single positive thymocytes. To our knowledge, this is the first study reporting the physiological role of primary cilia and Ift88 in regulating the differentiation of the thymus and T cells.
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25 April 2022
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Abbreviations
- TEC:
-
Thymic epithelial cell
- IS:
-
Immunological synapse
- TS:
-
Thymic synapse
- FTOC:
-
Fetal thymus organ culture
References
Adriani M, Martinez-Mir A, Fusco F et al (2004) Ancestral founder mutation of the nude (FOXN1) gene in congenital severe combined immunodeficiency associated with alopecia in southern Italy population. Ann Hum Genet 68:265–268. https://doi.org/10.1046/j.1529-8817.2004.00091.x
Allam AH, Charnley M, Pham K, Russell SM (2021) Developing T cells form an immunological synapse for passage through the β-selection checkpoint. J Cell Biol. https://doi.org/10.1083/jcb.201908108
Beech PL, Pagh-Roehl K, Noda Y et al (1996) Localization of kinesin superfamily proteins to the connecting cilium of fish photoreceptors. J Cell Sci 109(Pt 4):889–897. https://doi.org/10.1242/jcs.109.4.889
Boehm T, Bleul CC, Schorpp M (2003) Genetic dissection of thymus development in mouse and zebrafish. Immunol Rev 195:15–27. https://doi.org/10.1034/j.1600-065x.2003.00070.x
Boon M, Jorissen M, Proesmans M, De Boeck K (2013) Primary ciliary dyskinesia, an orphan disease. Eur J Pediatr 172:151–162. https://doi.org/10.1007/s00431-012-1785-6
Brown JM, Witman GB (2014) Cilia and diseases. Bioscience 64:1126–1137. https://doi.org/10.1093/biosci/biu174
Canterini S, Dragotto J, Dardis A et al (2017) Shortened primary cilium length and dysregulated Sonic hedgehog signaling in Niemann-Pick C1 disease. Hum Mol Genet 26:2277–2289. https://doi.org/10.1093/hmg/ddx118
Chen W, Frank ME, Jin W, Wahl SM (2001) TGF-beta released by apoptotic T cells contributes to an immunosuppressive milieu. Immunity 14:715–725. https://doi.org/10.1016/s1074-7613(01)00147-9
Christensen ST, Morthorst SK, Mogensen JB, Pedersen LB (2017) Primary cilia and coordination of receptor tyrosine kinase (RTK) and transforming growth factor β (TGF-β) signaling. Cold Spring Harb Perspect Biol. https://doi.org/10.1101/cshperspect.a028167
Clement CA, Ajbro KD, Koefoed K et al (2013) TGF-β signaling is associated with endocytosis at the pocket region of the primary cilium. Cell Rep 3:1806–1814. https://doi.org/10.1016/j.celrep.2013.05.020
Cordier AC (1975) Ultrastructure of the cilia of thymic cysts in “nude” mice. Anat Rec 181:227–249. https://doi.org/10.1002/ar.1091810206
Delaval B, Bright A, Lawson ND, Doxsey S (2011) The cilia protein IFT88 is required for spindle orientation in mitosis. Nat Cell Biol 13:461–468. https://doi.org/10.1038/ncb2202
Dinsmore C, Reiter JF (2016) Endothelial primary cilia inhibit atherosclerosis. EMBO Rep 17:156–166. https://doi.org/10.15252/embr.201541019
Dustin ML (2014) The immunological synapse. Cancer Immunol Res 2:1023–1033. https://doi.org/10.1158/2326-6066.CIR-14-0161
Finetti F, Paccani SR, Riparbelli MG et al (2009) Intraflagellar transport is required for polarized recycling of the TCR/CD3 complex to the immune synapse. Nat Cell Biol 11:1332–1339. https://doi.org/10.1038/ncb1977
Follit JA, Tuft RA, Fogarty KE, Pazour GJ (2006) The intraflagellar transport protein IFT20 is associated with the Golgi complex and is required for cilia assembly. Mol Biol Cell 17:3781–3792. https://doi.org/10.1091/mbc.e06-02-0133
Gencer S, Oleinik N, Kim J, Panneer Selvam S, De Palma R, Dany M, Nganga R, Thomas RJ, Senkal CE, Howe PH, Ogretmen B (2017) TGF-β receptor I/II trafficking and signaling at primary cilia are inhibited by ceramide to attenuate cell migration and tumor metastasis. Sci Signal 10(502):eaam7464. https://doi.org/10.1126/scisignal.aam7464. PMID: 29066540
Goetz SC, Ocbina PJR, Anderson KV (2009) The primary cilium as a Hedgehog signal transduction machine. Methods Cell Biol 94:199–222. https://doi.org/10.1016/S0091-679X(08)94010-3
Gorska MM, Alam R (2012) A mutation in the human Uncoordinated 119 gene impairs TCR signaling and is associated with CD4 lymphopenia. Blood 119:1399–1406. https://doi.org/10.1182/blood-2011-04-350686
Griffiths GM, Tsun A, Stinchcombe JC (2010) The immunological synapse: a focal point for endocytosis and exocytosis. J Cell Biol 189:399–406. https://doi.org/10.1083/jcb.201002027
Hailman E, Burack WR, Shaw AS et al (2002) Immature CD4+CD8+ thymocytes form a multifocal immunological synapse with sustained tyrosine phosphorylation. Immunity 16:839–848. https://doi.org/10.1016/S1074-7613(02)00326-6
Hauri-Hohl MM, Zuklys S, Keller MP et al (2008) TGF-beta signaling in thymic epithelial cells regulates thymic involution and postirradiation reconstitution. Blood 112:626–634. https://doi.org/10.1182/blood-2007-10-115618
Hauri-Hohl M, Zuklys S, Holländer GA, Ziegler SF (2014) A regulatory role for TGF-β signaling in the establishment and function of the thymic medulla. Nat Immunol 15:554–561. https://doi.org/10.1038/ni.2869
Haycraft CJ, Zhang Q, Song B et al (2007) Intraflagellar transport is essential for endochondral bone formation. Development 134:307–316. https://doi.org/10.1242/dev.02732
Hildebrandt F, Benzing T, Katsanis N (2011) Ciliopathies. N Engl J Med 364:1533–1543. https://doi.org/10.1056/NEJMra1010172
Hirokawa N, Tanaka Y, Okada Y, Takeda S (2006) Nodal flow and the generation of left-right asymmetry. Cell 125:33–45. https://doi.org/10.1016/j.cell.2006.03.002
Hogquist KA, Baldwin TA, Jameson SC (2005) Central tolerance: learning self-control in the thymus. Nat Rev Immunol 5:772–782. https://doi.org/10.1038/nri1707
Hozumi K, Mailhos C, Negishi N et al (2008) Delta-like 4 is indispensable in thymic environment specific for T cell development. J Exp Med 205:2507–2513. https://doi.org/10.1084/jem.20080134
Huangfu D, Anderson KV (2005) Cilia and Hedgehog responsiveness in the mouse. Proc Natl Acad Sci USA 102:11325–11330. https://doi.org/10.1073/pnas.0505328102
Huangfu D, Liu A, Rakeman AS et al (2003) Hedgehog signalling in the mouse requires intraflagellar transport proteins. Nature 426:83–87. https://doi.org/10.1038/nature02061
Huppa JB, Davis MM (2003) T-cell-antigen recognition and the immunological synapse. Nat Rev Immunol 3:973–983. https://doi.org/10.1038/nri1245
Kozminski KG, Beech PL, Rosenbaum JL (1995) The Chlamydomonas kinesin-like protein FLA10 is involved in motility associated with the flagellar membrane. J Cell Biol 131:1517–1527. https://doi.org/10.1083/jcb.131.6.1517
Labour M-N, Riffault M, Christensen ST, Hoey DA (2016) TGFβ1-induced recruitment of human bone mesenchymal stem cells is mediated by the primary cilium in a SMAD3-dependent manner. Sci Rep 6:35542. https://doi.org/10.1038/srep35542
Lau C-I, Barbarulo A, Solanki A et al (2017) The kinesin motor protein Kif7 is required for T-cell development and normal MHC expression on thymic epithelial cells (TEC) in the thymus. Oncotarget 8:24163–24176. https://doi.org/10.18632/oncotarget.15241
Le Borgne M, Shaw AS (2013) Immunology. Do T cells have a cilium? Science 342:1177–1178. https://doi.org/10.1126/science.1248078
Lee J, Yi S, Won M et al (2018) Loss-of-function of IFT88 determines metabolic phenotypes in thyroid cancer. Oncogene 37:4455–4474. https://doi.org/10.1038/s41388-018-0211-6
Li MO, Flavell RA (2008) TGF-beta: a master of all T cell trades. Cell 134:392–404. https://doi.org/10.1016/j.cell.2008.07.025
Liu G, Link JT, Pei Z et al (2000) Discovery of novel p-arylthio cinnamides as antagonists of leukocyte function-associated antigen-1/intracellular adhesion molecule-1 interaction. 1. Identification of an additional binding pocket based on an anilino diaryl sulfide lead. J Med Chem 43:4025–4040. https://doi.org/10.1021/jm0002782
Liu D, Bryceson YT, Meckel T et al (2009) Integrin-dependent organization and bidirectional vesicular traffic at cytotoxic immune synapses. Immunity 31:99–109. https://doi.org/10.1016/j.immuni.2009.05.009
Monks CR, Freiberg BA, Kupfer H et al (1998) Three-dimensional segregation of supramolecular activation clusters in T cells. Nature 395:82–86. https://doi.org/10.1038/25764
Nehls M, Pfeifer D, Schorpp M et al (1994) New member of the winged-helix protein family disrupted in mouse and rat nude mutations. Nature 372:103–107. https://doi.org/10.1038/372103a0
Nehls M, Kyewski B, Messerle M et al (1996) Two genetically separable steps in the differentiation of thymic epithelium. Science 272:886–889. https://doi.org/10.1126/science.272.5263.886
Nigg EA, Raff JW (2009) Centrioles, centrosomes, and cilia in health and disease. Cell 139:663–678. https://doi.org/10.1016/j.cell.2009.10.036
Nonaka S, Tanaka Y, Okada Y et al (1998) Randomization of left-right asymmetry due to loss of nodal cilia generating leftward flow of extraembryonic fluid in mice lacking KIF3B motor protein. Cell 95:829–837. https://doi.org/10.1016/S0092-8674(00)81705-5
Omori Y, Chaya T, Katoh K et al (2010) Negative regulation of ciliary length by ciliary male germ cell-associated kinase (Mak) is required for retinal photoreceptor survival. Proc Natl Acad Sci USA 107:22671–22676. https://doi.org/10.1073/pnas.1009437108
Pazour GJ, Rosenbaum JL (2002) Intraflagellar transport and cilia-dependent diseases. Trends Cell Biol 12:551–555. https://doi.org/10.1016/s0962-8924(02)02410-8
Pazour GJ, Dickert BL, Vucica Y et al (2000) Chlamydomonas IFT88 and its mouse homologue, polycystic kidney disease gene tg737, are required for assembly of cilia and flagella. J Cell Biol 151:709–718. https://doi.org/10.1083/jcb.151.3.709
Richie LI, Ebert PJR, Wu LC et al (2002) Imaging synapse formation during thymocyte selection: inability of CD3ζ to form a stable central accumulation during negative selection. Immunity 16:595–606. https://doi.org/10.1016/S1074-7613(02)00299-6
Rizaldy D, Toriyama M, Kato H et al (2021) Increase in primary cilia in the epidermis of patients with atopic dermatitis and psoriasis. Exp Dermatol. https://doi.org/10.1111/exd.14285
Robert A, Margall-Ducos G, Guidotti J-E et al (2007) The intraflagellar transport component IFT88/polaris is a centrosomal protein regulating G1-S transition in non-ciliated cells. J Cell Sci 120:628–637. https://doi.org/10.1242/jcs.03366
Rosenbaum JL, Witman GB (2002) Intraflagellar transport. Nat Rev Mol Cell Biol 3:813–825. https://doi.org/10.1038/nrm952
Rossi SW, Jeker LT, Ueno T et al (2007) Keratinocyte growth factor (KGF) enhances postnatal T-cell development via enhancements in proliferation and function of thymic epithelial cells. Blood 109:3803–3811. https://doi.org/10.1182/blood-2006-10-049767
Sanjabi S, Oh SA, Li MO (2017) Regulation of the immune response by TGF-β: from conception to autoimmunity and infection. Cold Spring Harb Perspect Biol. https://doi.org/10.1101/cshperspect.a022236
Satir P, Pedersen LB, Christensen ST (2010) The primary cilium at a glance. J Cell Sci 123:499–503. https://doi.org/10.1242/jcs.050377
Sebuwufu PH (1968) Ultrastructure of human fetal thymic cilia. J Ultrastruct Res 24:171–180. https://doi.org/10.1016/s0022-5320(68)90056-7
Sedmak T, Wolfrum U (2010) Intraflagellar transport molecules in ciliary and nonciliary cells of the retina. J Cell Biol 189:171–186. https://doi.org/10.1083/jcb.200911095
Spasic M, Jacobs CR (2017) Lengthening primary cilia enhances cellular mechanosensitivity. Eur Cell Mater 33:158–168. https://doi.org/10.22203/eCM.v033a12
Stinchcombe JC, Majorovits E, Bossi G et al (2006) Centrosome polarization delivers secretory granules to the immunological synapse. Nature 443:462–465. https://doi.org/10.1038/nature05071
Takahama Y, Ohigashi I, Baik S, Anderson G (2017) Generation of diversity in thymic epithelial cells. Nat Rev Immunol 17:295–305. https://doi.org/10.1038/nri.2017.12
Takeda S, Narita K (2012) Structure and function of vertebrate cilia, towards a new taxonomy. Differentiation 83:S4-11. https://doi.org/10.1016/j.diff.2011.11.002
Takeda S, Yonekawa Y, Tanaka Y et al (1999) Left-right asymmetry and kinesin superfamily protein KIF3A: new insights in determination of laterality and mesoderm induction by kif3A–/– mice analysis. J Cell Biol 145:825–836. https://doi.org/10.1083/jcb.145.4.825
Tsyklauri O, Niederlova V, Forsythe E et al (2021) Bardet-Biedl Syndrome ciliopathy is linked to altered hematopoiesis and dysregulated self-tolerance. EMBO Rep 22:e50785. https://doi.org/10.15252/embr.202050785
Vertii A, Bright A, Delaval B et al (2015) New frontiers: discovering cilia-independent functions of cilia proteins. EMBO Rep 16:1275–1287. https://doi.org/10.15252/embr.201540632
Villegas JA, Gradolatto A, Truffault F et al (2018) Cultured human thymic-derived cells display medullary thymic epithelial cell phenotype and functionality. Front Immunol 9:1663. https://doi.org/10.3389/fimmu.2018.01663
Vivar OI, Masi G, Carpier J-M et al (2016) IFT20 controls LAT recruitment to the immune synapse and T-cell activation in vivo. Proc Natl Acad Sci USA 113:386–391. https://doi.org/10.1073/pnas.1513601113
Yang HW, Lee S, Yang D et al (2021) Deletions in CWH43 cause idiopathic normal pressure hydrocephalus. EMBO Mol Med 13:e13249. https://doi.org/10.15252/emmm.202013249
Yuan X, Garrett-Sinha LA, Sarkar D, Yang S (2014) Deletion of IFT20 in early stage T lymphocyte differentiation inhibits the development of collagen-induced arthritis. Bone Res 2:14038. https://doi.org/10.1038/boneres.2014.38
Acknowledgements
We thank Dr. Georg A. Holländer (University of Oxford) for providing us with the Foxn1-Cre transgenic mice, Dr. Ken-ichi Hirano (Tokai University School of Medicine) for helping with the FTOC, Dr. Tetsuo Kondo and Wakaba Iha (University of Yamanashi) for preparing the paraffin tissue sections and hematoxylin and eosin staining, Dr. Sonoko Habu (Juntendo University School of Medicine) and Dr. Atsuhito Nakao (University of Yamanashi) for valuable discussion, Jun Hirata (University of Yamanashi) for helping with breeding the mice, and Kazuko Sawanobori (University of Yamanashi) for secretarial assistance. We also would like to thank Enago (www.enago.jp) for the English language review.
Funding
This study was supported by a JSPS KAKENHI (Grant Number 16K18584 and 20K16106 to O.K.; 17K08511 and 21K06753 to S.T.); the NIBB Collaborative Research Program (18–502) to O.K.; the Cooperative Study Program of Exploratory Research Center on Life and Living Systems (ExCELLS) (ExCELLS program No. 19–403 and 20–406) to O.K.; Takeda Science Foundation to O.K.; and a Research Grant for Young Scholars funded by Yamanashi Prefecture to O.K.
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OK and ST designed research; OK performed experiments; SN contributed to imaging tool; KH contributed to flow cytometric analysis; OK, SN, KH, and ST analyzed data; OK and ST wrote the manuscript.
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Kutomi, O., Nonaka, S., Hozumi, K. et al. Depletion of Ift88 in thymic epithelial cells affects thymic synapse and T-cell differentiation in aged mice. Anat Sci Int 97, 409–422 (2022). https://doi.org/10.1007/s12565-022-00663-w
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DOI: https://doi.org/10.1007/s12565-022-00663-w