Skip to main content

Advertisement

Log in

High-altitude adaptation: Role of genetic and epigenetic factors

  • Mini-Review
  • Published:
Journal of Biosciences Aims and scope Submit manuscript

Abstract

After the completion of the Human Genome Project in 2003, the field of genetics has witnessed massive progress that spanned research in high-altitude biology also. Especially the decade of 2010s witnessed the most of it and revealed various genetic signatures of high-altitude adaptation in Tibetans, Andeans and Ethiopians. High-altitude area, with its extreme environment, harbors a tremendous potential for gene-environment interaction, an aspect that could be explored by epigenetic studies. There are only four original articles till now which explore the epigenetic aspect of high-altitude adaptation or acclimatization. However, there is no comprehensive review to provide complete information on the genetic and epigenetic aspects of high-altitude adaptations. Hence, we have prepared this mini-review to summarize the genetic and epigenetic studies that have correlated the high-altitude adaptation or acclimatization, until recently.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Figure 1

Similar content being viewed by others

References

  • Aldenderfer MS 2003 Moving Up in the World: Archaeologists seek to understand how and when people came to occupy the Andean and Tibetan plateaus. Am. Sci. 91 542–549

    Google Scholar 

  • Aldenderfer M 2011 Peopling the Tibetan plateau: insights from archaeology. High Alt. Med. Biol. 12 141–147

    PubMed  Google Scholar 

  • Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK and Di Rienzo A 2012 The genetic architecture of adaptations to high-altitude in Ethiopia. PLoS Genet. 8 e1003110

    CAS  PubMed  PubMed Central  Google Scholar 

  • Basak N, Norboo T, Mustak MS and Thangaraj K 2021 Heterogeneity in hematological parameters of high and low altitude Tibetan populations. J. Blood Med. 12 287–298

    PubMed  PubMed Central  Google Scholar 

  • Beall CM 2006 Andean, Tibetan, and Ethiopian patterns of adaptation to high-altitude hypoxia. Integr. Comp. Biol. 46 18–24

    PubMed  Google Scholar 

  • Beall CM 2007 Two routes to functional adaptation: Tibetan and Andean high-altitude natives. Proc. Natl. Acad. Sci. USA 104 8655–8660

    CAS  PubMed  PubMed Central  Google Scholar 

  • Beall CM, Laskowski D, Strohl KP, et al. 2001 Pulmonary nitric oxide in mountain dwellers. Nature 414 411–412

    CAS  PubMed  Google Scholar 

  • Beall CM, Cavalleri GL, Deng L, et al. 2010 Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc. Natl. Acad. Sci. USA 107 11459–11464

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bigham AW 2016 Genetics of human origin and evolution: high-altitude adaptations. Curr. Opin. Genet. Dev. 41 8–13

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bigham AW, Mao X, Mei R, et al. 2009 Identifying positive selection candidate loci for high-altitude adaptation in Andean populations. Hum. Genom. 4 79–90

    CAS  Google Scholar 

  • Brutsaert TD, Soria R, Caceres E, Spielvogel H and Haas JD 1999 Effect of developmental and ancestral high-altitude exposure on chest morphology and pulmonary function in Andean and European/North American natives. Am. J. Hum. Biol. 11 383–395

    PubMed  Google Scholar 

  • Chala-Aldana D, Bocherens H, Miller C, Moore K, Hodgins G and Rademaker K 2018 Investigating mobility and highland occupation strategies during the Early Holocene at the Cuncaicha rock shelter through strontium and oxygen isotopes. J. Archaeol. Sci. Rep. 19 811–827

    Google Scholar 

  • Childebayeva A, Jones TR, Goodrich JM, et al. 2019a LINE-1 and EPAS1 DNA methylation associations with high-altitude exposure. Epigenetics 14 1–15

    PubMed  PubMed Central  Google Scholar 

  • Childebayeva A, Harman T, Weinstein J, Goodrich JM, Dolinoy DC, Day TA, Bigham AW and Brutsaert TD 2019b DNA Methylation changes are associated with an incremental ascent to high-altitude. Front. Genet. 10 1062

    CAS  PubMed  PubMed Central  Google Scholar 

  • Childebayeva A, Goodrich JM, Leon-Velarde F, Rivera-Chira M, Kiyamu M, Brutsaert TD, Dolinoy DC and Bigham AW 2020 Genome-wide epigenetic signatures of adaptive developmental plasticity in the andes. Genome Biol. Evol.

    Article  PubMed Central  Google Scholar 

  • Choudhury SR, Cui Y, Lubecka K, Stefanska B and Irudayaraj J 2016a CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter. Oncotarget 7 46545–46556

    PubMed  PubMed Central  Google Scholar 

  • Choudhury SR, Cui Y, Narayanan A, et al. 2016b Optogenetic regulation of site-specific subtelomeric DNA methylation. Oncotarget 7 50380–50391

    PubMed  PubMed Central  Google Scholar 

  • Crawford JE, Amaru R, Song J, et al. 2017 Natural selection on genes related to cardiovascular health in high-altitude adapted Andeans. Am. J. Hum. Genet. 101 752–767

    CAS  PubMed  PubMed Central  Google Scholar 

  • Eichstaedt CA, Antão T, Pagani L, Cardona A, Kivisild T and Mormina M 2014 The Andean adaptive toolkit to counteract high-altitude maladaptation: genome-wide and phenotypic analysis of the Collas. PLoS ONE 9 e93314

    PubMed  PubMed Central  Google Scholar 

  • Hassen M 1990 The Oromo of Ethiopia: A History (Cambridge, England, Cambridge University Press) 1570–1860

  • Huerta-Sánchez E, DeGiorgio M, Pagani L, et al. 2013 Genetic signatures reveal high-altitude adaptation in a set of Ethiopian populations. Mol. Biol. Evol. 30 1877–1888

    PubMed  PubMed Central  Google Scholar 

  • Jacovas VC, Couto-Silva CM, Nunes K, Lemes RB, de Oliveira MZ, Salzano FM, Bortolini MC and Hünemeier T 2018 Selection scan reveals three new loci related to high-altitude adaptation in Native Andeans. Sci. Rep. 8 12733

    PubMed  PubMed Central  Google Scholar 

  • Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, Beall CM and Di Rienzo A 2014 Admixture facilitates genetic adaptations to high-altitude in Tibet. Nat. Commun. 5 3281

    PubMed  Google Scholar 

  • Julian CG 2017 Epigenomics and human adaptation to high-altitude. J. Appl. Physiol. 123 1362–1370

    CAS  PubMed  PubMed Central  Google Scholar 

  • Julian CG, Gonzales M, Rodriguez A, et al. 2015a Perinatal hypoxia increases susceptibility to high-altitude polycythemia and attendant pulmonary vascular dysfunction. Am. J. Physiol. Heart Circ. Physiol. 309 H565-573

    CAS  PubMed  PubMed Central  Google Scholar 

  • Julian CG, Pedersen BS, Salmon CS, Yang IV, Gonzales M, Vargas E, Moore LG and Schwartz DA 2015b Unique DNA methylation patterns in offspring of hypertensive pregnancy. Clin. Transl. Sci. 8 740–745

    CAS  PubMed  PubMed Central  Google Scholar 

  • León-Velarde F, Maggiorini M, Reeves JT, et al. 2005 Consensus statement on chronic and subacute high-altitude diseases. High Alt. Med. Biol. 6 147–157

    PubMed  Google Scholar 

  • Lewis HS 1966 The origins of the galla and somali. J. Afr. His. 7 27–46

    Google Scholar 

  • Lindo J, Haas R, Hofman C, et al. 2018 The genetic prehistory of the Andean highlands 7000 years BP though European contact. Sci. Adv. 4 eaau4921

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lister R, Pelizzola M, Dowen RH, et al. 2009 Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462 315–322

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lo CL, Choudhury SR, Irudayaraj J and Zhou FC 2017 Epigenetic editing of Ascl1 gene in neural stem cells by optogenetics. Sci. Rep. 7 42047

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mejía OM, Prchal JT, León-Velarde F, Hurtado A and Stockton DW 2005 Genetic association analysis of chronic mountain sickness in an Andean high-altitude population. Haematologica 90 13–19

    PubMed  Google Scholar 

  • Monge CC, Arregui A and León-Velarde F 1992 Pathophysiology and epidemiology of chronic mountain sickness. Int. J. Sports Med. 13 S79-81

    Google Scholar 

  • Peng Y, Yang Z, Zhang H, et al. 2010 Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas. Mol. Biol. Evol. 28 1075–1081

    PubMed  Google Scholar 

  • Peng Y, Cui C, He Y, et al. 2017 Down-regulation of EPAS1 transcription and genetic adaptation of Tibetans to high-altitude hypoxia. Mol. Biol. Evol. 34 818–830

    CAS  PubMed  PubMed Central  Google Scholar 

  • Qi X, Cui C, Peng Y, et al. 2013 Genetic evidence of paleolithic colonization and neolithic expansion of modern humans on the tibetan plateau. Mol. Biol. Evol. 30 1761–1778

    CAS  PubMed  Google Scholar 

  • Rademaker K, Hodgins G, Moore K, et al. 2014 Paleoindian settlement of the high-altitude Peruvian Andes. Science 346 466–469

    CAS  PubMed  Google Scholar 

  • Ronen R, Zhou D, Bafna V and Haddad GG 2014 The genetic basis of chronic mountain sickness. Physiology 29 403–412

    CAS  PubMed  PubMed Central  Google Scholar 

  • Sahota IS and Panwar NS 2013 Prevalence of chronic mountain sickness in high-altitude districts of Himachal Pradesh. Indian J. Occup. Environ. Med. 17 94–100

    PubMed  PubMed Central  Google Scholar 

  • Scheinfeldt LB, Soi S, Thompson S, et al. 2012 Genetic adaptation to high-altitude in the Ethiopian highlands. Genome Biol. 13 R1

    CAS  PubMed  PubMed Central  Google Scholar 

  • Semenza GL 1996 Transcriptional regulation by hypoxia-inducible factor 1 molecular mechanisms of oxygen homeostasis. Trends Cardiovasc. Med. 6 151–157

    CAS  PubMed  Google Scholar 

  • Simonson TS 2015 Altitude adaptation: a glimpse through various lenses. High Alt. Med. Biol. 16 125–137

    CAS  PubMed  PubMed Central  Google Scholar 

  • Simonson TS, Yang Y, Huff CD, et al. 2010 Genetic evidence for high-altitude adaptation in Tibet. Science 329 72–75

    CAS  PubMed  Google Scholar 

  • Smith TG, Robbins PA and Ratcliffe PJ 2008 The human side of hypoxia-inducible factor. Br. J. Haematol. 141 325–334

    CAS  PubMed  PubMed Central  Google Scholar 

  • Stobdan T, Zhou D, Ao-Ieong E, et al. 2015 Endothelin receptor B, a candidate gene from human studies at high-altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice. Proc. Natl. Acad. Sci. USA 112 10425–10430

    CAS  PubMed  PubMed Central  Google Scholar 

  • Tashi T, Scott Reading N, Wuren T, et al. 2017 Gain-of-function EGLN1 prolyl hydroxylase (PHD2 D4E:C127S) in combination with EPAS1 (HIF-2α) polymorphism lowers hemoglobin concentration in Tibetan highlanders. J. Mol. Med. 95 665–670

    CAS  PubMed  Google Scholar 

  • Udpa N, Ronen R, Zhou D, et al. 2014 Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. Genome Biol. 15 R36

    PubMed  PubMed Central  Google Scholar 

  • Valverde G, Zhou H, Lippold S, de Filippo C, Tang K, López Herráez D, Li J and Stoneking M 2015 A novel candidate region for genetic adaptation to high-altitude in Andean populations. PLoS ONE 10 e0125444

    PubMed  PubMed Central  Google Scholar 

  • Villafuerte FC and Corante N 2016 Chronic Mountain sickness: clinical aspects, etiology, management, and treatment. High Alt. Med. Biol. 17 61–69

    PubMed  PubMed Central  Google Scholar 

  • Xu S, Li S, Yang Y, et al. 2011 A genome-wide search for signals of high-altitude adaptation in Tibetans. Mol. Biol. Evol. 28 1003–1011

    PubMed  Google Scholar 

  • Yang J, Jin ZB, Chen J, et al. 2017 Genetic signatures of high-altitude adaptation in Tibetans. Proc. Natl. Acad. Sci. USA 114 4189–4194

    CAS  PubMed  PubMed Central  Google Scholar 

  • Yi X, Liang Y, Huerta-Sanchez E, et al. 2010 Sequencing of 50 human exomes reveals adaptation to high-altitude. Science 329 75–78

    CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang XL, Ha BB, Wang SJ, et al. 2018 The earliest human occupation of the high-altitude Tibetan Plateau 40 thousand to 30 thousand years ago. Science 362 1049–1051

    CAS  PubMed  Google Scholar 

Download references

Acknowledgments

NB acknowledges the Department of Science and Technology (GoI) for the DST-INSPIRE fellowship. NB additionally acknowledges DST (GoI) and the British Council (UK) for the award of short-term research internship under Newton Bhabha PhD Placement Programme.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nipa Basak.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Basak, N., Thangaraj, K. High-altitude adaptation: Role of genetic and epigenetic factors. J Biosci 46, 107 (2021). https://doi.org/10.1007/s12038-021-00228-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s12038-021-00228-5

Keywords

Navigation