Skip to main content
Log in

Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (Sclerotinia sclerotiorum)

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

The frequency of soybean white mold (Sclerotinia sclerotiorum, SWM) outbreaks has increased since 1978, and this disease is currently considered to be the second most important cause of soybean yield loss worldwide. We have studied SWM in stems of soybean cultivar Maple Arrow, which shows partial resistance to SWM, in an attempt to identify the quantitative trait loci (QTLs) underlying soluble pigment(s) content, which is associated with SWM resistance. A SWM-susceptible cultivar, Hefeng 25, was crossed with Maple Arrow, and 149 F5:6 recombinant inbred lines were subsequently advanced through single-seed-descent. A total of 109 simple sequence repeat (SSR) markers were used to construct a genetic linkage map. Three QTLs for soluble pigment content in soybean stems associated with the resistance to SWM, namely, Qsp-1 (Satt502-Sat_159), Qsp-2 (Sat_156-Satt251), and Qsp-3 (Satt525-Satt233), were identified in 2007 and 2008 and located onto linkage groups D1a+q, B1 and A2, respectively. The phenotypic variation (R 2) explained by these QTLs ranged from 6.29 to 15.37%. These three QTLs were not significantly related to known QTLs associated with escape resistant mechanisms. The use of these QTLs in marker-assisted selection may contribute to improved soybean resistance to SWM.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Arahana VS, Graef GL, Specht JE, Steadman JR, Eskridge KM (2001) Identification of QTLs for resistance to Sclerotinia sclerotiorum in soybean. Crop Sci 41:180–188

    CAS  Google Scholar 

  • Basten CJ, Weir BS, Zeng ZB (1996) QTL cartographer. North Carolina State University, Raleigh

    Google Scholar 

  • Beavis WD (1998) QTL analyses: power, precision, and accuracy. In: Paterson AH (ed) Molecular dissection of complex traits. CRC Press, Boca Raton, pp 145–162

    Google Scholar 

  • Biehn WL, Kuc J, Williams EB (1968a) Accumulation of phenols in resistant plant-fungi interactions. Phytopathology 58:1255–1260

    CAS  Google Scholar 

  • Biehn WL, Williams EB, Kuc J (1968b) Fungitoxicity of phenols accumulating in Glycine max–fungi interactions. Phytopathology 58:1261–1264

    CAS  Google Scholar 

  • Blum A, Klueva N, Nguven HT (2001) Wheat cellular thermo tolerance is related to yield under heat stress. Euphytica 117:117–123

    Article  Google Scholar 

  • Boland GJ, Hall R (1986) Growth room evaluation of soybean cultivars for resistance to Sclerotinta sclerotiorum. Can J Plant Sci 66:559–564

    Google Scholar 

  • Boland GJ, Hall R (1987) Evaluating soybean cultivars for resistance to Sclerotinia sclerotiorum under field conditions. Plant Dis 71:934–936

    Article  Google Scholar 

  • Chun D, Kao LB, Lockwood JL, Isleib TG (1987) Laboratory and field assessment of resistance in soybean to stem rot caused by Sclerotinia sclerotiorum. Plant Dis 71:811–815

    Article  Google Scholar 

  • Churchill RW, Doerge GA (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971

    CAS  PubMed  Google Scholar 

  • Cline MN, Jacobsen BJ (1983) Methods for evaluating soybean cultivars for resistance to Sclerotinia sclerotiorum. Plant Dis 67:784–786

    Article  Google Scholar 

  • Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lara KG, Kahler AL, Kaya N, VanToai TT, Lohnes DG, Chung J, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39:1464–1490

    Article  CAS  Google Scholar 

  • Deikman J, Hammer PE (1995) Induction of anthocyanin accumulation by cytokinins in Arabidopsis thaliana. Plant Physiol 108:47–57

    CAS  PubMed  Google Scholar 

  • Delaney DE, Graef GL, Rutledge S, Power K, Higgins B, Steadman JR, Diers B (1997) Mapping QTL associated with Sclerotinia stem rot resistance in soybean (abstract). Poster presented at Plant and Animal V, San Diego

  • Donaldson PA, Anderson T, Lane BG, Davidson A, Simmonds DH (2001) Soybean plants expressing an active oligomeric oxalate oxidase from the whieat gf-2.8(germin) gene are resistant to the oxalate-secreting pathogen Sclerotina sclerotiorum. Physiol Mol Plant P 59:297–307

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

    Google Scholar 

  • Fernando WGD, Ramarathnama R, Krishnamoorthyb AS, Savchuka SC (2005) Identification and use of potential bacterial organic antifungal volatiles in biocontrol. Soil Biol Biochem 37:955–964

    Article  CAS  Google Scholar 

  • Gondran J, Leclercq P (1993) Genetic variability of soybean for resistance to Sclerotinia sclerotiorum (Lib) de Bary. Statistical relationship with some traits of the crop. Agronomy 13(2):85–94

    Article  Google Scholar 

  • Grau CR (1988) Sclerotinia stem rot of soybean. In: Wyllie D, Scott DH (eds) Soybean diseases of the North Central region. American Phytopathological Society, St. Paul, pp 56–149

    Google Scholar 

  • Grau CR, Radke VL (1984) Effects of cultivars and cultural practices on Sclerotinia stem rot of soybean. Plant Dis 68:56–58

    Article  Google Scholar 

  • Grau CR, Radke VL, Gillespie FL (1982) Resistance of soybean cultivars to Sclerotinia sclerotiorum. Plant Dis 66:506–508

    Google Scholar 

  • Grau CR, Dorrance AE, Bond J, Russin J (2004) Fungal diseases. In: Boerma HR, Specht JE (eds) Soybeans: improvement, production and uses, 3rd edn. Agronomy Mongraph 16. ASA, CSSA, and SSSA, Madison, pp 679–763

    Google Scholar 

  • Guo XM, Wang DC, Gordon SG, Helliwell E, Smith T, Berry SA, Martin SK, Dorrance AE (2008) Genetic mapping of QTLs underlying partial resistance to Sclerotinia sclerotiorum in soybean PI 391589A and PI 391589B. Crop Sci 48:1129–1139

    Article  Google Scholar 

  • Hammerschmidt R, Nicholson RL (1977) Resistance of maize to anthracnose: changes in host phenols and pigments. Phytopathology 67:251–258

    Article  CAS  Google Scholar 

  • Harborne JB (1965) Flavonoid pigments. In: Boner J, Varner JE (eds) Plant biochemistry. Academic Press, New York, pp 618–640

    Google Scholar 

  • Harborne JB (1967) Comparative biochemistry of the flavonoids. Academic Press, London

    Google Scholar 

  • Harborne JB (1976) Functions of flavonoids in plants. In: Goodwin TW (ed) Chemistry and biochemistry of plant pigments. Academic Press, London, pp 736–778

    Google Scholar 

  • Hildebrand AA (1948) Soybean diseases in Ontario. Soybean Digest 10:16–17

    Google Scholar 

  • Hine RB, Wheeler JE (1970) The occurrence of some previously unreported diseases in Arizona. Plant Dis Rep 54:179–180

    Google Scholar 

  • Hoffman DD, Hartman GL, Mueller DS, Leitz RA, Nickell CD, Pedersen WL (1998) Yield and seed quality of soybean cultivars infected with Sclerotinia sclerotiorum. Plant Dis 82:826–829

    Article  Google Scholar 

  • Hrazdina G (1982) Anthocyanins. In: Harborne JB, Mabry TJ (eds) The flavonoids. Advances in research. Chapman and Hall, London, pp 135–188

    Google Scholar 

  • Kim HS, Diers BW (2000) Inheritance of partial resistance to Sclerotinia stem rot in soybean. Crop Sci 40:55–61

    Article  Google Scholar 

  • Kim HS, Sneller CH, Diers BW (1999) Evaluation of soybean cultivars for resistance to Sclerotinia stem rot in field environments. Crop Sci 39:64–68

    Article  Google Scholar 

  • Koch LM, Hidebrand AA (1946) Soybean diseases in southwestern Ontario in 1946. Can Plant Dis Sur 26:27–28

    Google Scholar 

  • Kolkman JM, Kelly JD (2000) An indirect test using oxalate to determine physiological resistance to white mold in common bean. Crop Sci 40:281–285

    Article  Google Scholar 

  • Kraft JM (1977) The role of delphinidin and sugars in the resistance of pea seedlings to Fusarium root rot. Phytopathology 67:1057–1061

    Article  CAS  Google Scholar 

  • Kumar J, Kaiser WJ, Hannan RM (1991) Damping-off resistance in chickpeas. Plant Dis 75:1244–1245

    Google Scholar 

  • Lander ES, Green P, Abrahamson J, Baarlow A, Daly MJ, Lincoln SE, Newburg L (1987) MapMaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    Article  CAS  PubMed  Google Scholar 

  • Muehlbauer FJ, Kraft JM (1978) Effect of pea seed genotype on pre-emergence damping off and resistance to Fusarium and Pythium root rot. Crop Sci 32:1–323

    Google Scholar 

  • Nelson BD, Helms TC, Olson MA (1991) Comparison of laboratory and field evaluations of resistance in soybean to Sclerotinia sclerotiorum. Plant Dis 75:662–665

    Google Scholar 

  • Phipps PM, Porter DM (1982) Sclerotinia blight of soybean caused by Sclerotinia minor and Scterotinia sclerotiorum. Plant Dis 66:163–165

    Google Scholar 

  • Signoret PA, Bemaux PC, Poinso B (1975) Soybean diseases in France in 1974. Plant Dis Rep 59:616–617

    Google Scholar 

  • Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122–128

    Article  CAS  PubMed  Google Scholar 

  • Steadman JR (1979) Control of plant diseases caused by Sclerotinia species. Phytopathology 69:904–907

    Article  CAS  Google Scholar 

  • Sutton DC, Deverall BJ (1984) Phytoalexin accumulation during infection of bean and soybean by ascospores and mycelium of Sclerotinia sclerotiorum. Plant Pathol 33:337–383

    Article  Google Scholar 

  • Thompson AH, van der Westhuizen GCA (1979) Scterotinia sclerotiorum (Lib.) de Bary on soybean in South Africa. Phytophylactica 11:145–148

    Google Scholar 

  • Trigiano RN, Caetano-Anolles G (1998) Laboratory exercises on DNA amplification fingerprinting for evaluating the molecular diversity of horticultural species. Hort Tech 8:413–423

    Google Scholar 

  • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTL. Heredity 93:77–78

    Article  CAS  Google Scholar 

  • Wegulo SN, Yang XB, Martinson CA (1998) Soybean cultivar responses to Sclerotinia sclerotiorum in field and controlled environment studies. Plant Dis 82:1264–1270

    Article  Google Scholar 

  • Wrather JA, Anderson TR, Arsyad DM, Gai J, Ploper LD, Porta-Puglia A, Ram HH, Yorinori JT (1997) Soybean disease loss estimates for the top 10 soybean producing countries in 1994. Plant Dis 81:107–110

    Article  Google Scholar 

  • Young ND (1996) QTL mapping and quantitative disease resistance in plants. Annu Rev Phytopathol 34:479–501

    Article  CAS  PubMed  Google Scholar 

  • Zeng Z (1993) Theoretical basis of separation of multiple linked gene effects on mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972–10976

    Article  CAS  PubMed  Google Scholar 

  • Zou J, Lee J, Singh R, Xu SS, Cregan PB, Hymowitz T (2003) Assignment of molecular linkage groups to the soybean chromosomes by primary trisomics. Theor Appl Genet 107:745–750

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This study was conducted in the Key Laboratory of Soybean Biology of Chinese Education Ministry and financially supported by National 863 Projects (Contract No. 2006AA10Z1F1 and 2006AA100104-4), 948 project of Agricultural ministry of China (Contract No. 2006-G5) and National International Cooperation Project.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Wenbin Li.

Additional information

Dongmei Li, Mingming Sun and Yingpeng Han have made equal contributions to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Li, D., Sun, M., Han, Y. et al. Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (Sclerotinia sclerotiorum). Euphytica 172, 49–57 (2010). https://doi.org/10.1007/s10681-009-0036-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-009-0036-z

Keywords

Navigation