References
Chatani M, Matsumoto Y, Mizuta H, Ikegami M, Boulton MI, Davies JW (1991) The nucleotide sequence and genome structure of the geminivirus miscanthus streak virus. J Gen Virol 72:2325–2331
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704
Gorbalenya AE, Koonin EV (1989) Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res 11:8413–8440
Horváth GV, Pettkó-Szandtner A, Nikovics K, Bilgin M, Boulton M, Davies JW, Gutiérrez C, Dudits D (1998) Prediction of functional regions of the maize streak virus replication-associated proteins by protein–protein interaction analysis. Plant Mol Biol 38:699–712
Koonin EV, Ilyina TV (1992) Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J Gen Virol 73:2763–2766
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463
Nash TE, Dallas MB, Reyes MI, Buhrman GK, Ascencio-Ibañez JT, Hanley-Bowdoin L (9201) 1) Functional analysis of a novel motif conserved ac ross geminivirus Rep proteins. J Virol 85:1182–1192
Owor BE, Shepherd DN, Taylor NJ, Edema R, Monjane AL, Thomson JA, Martin DP, Varsani A (2007) Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods 140:100–105
Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149:97–102
Stanley J, Bisaro D, Briddon R, Brown J, Fauquet C, Harrison B, Rybicki E, Stenger D (2005) Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy. VIIIth report of the ICTV. Elsevier/Academic Press, London, pp 301–326
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
Varsani A, Shepherd DN, Dent K, Monjane AL, Rybicki EP, Martin DP (2009) A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family. Virol J 6:36
Xie Q, Suarezlopez P, Gutierrez C (1995) Identification and analysis of a retinoblastoma binding motif in the replication protein of a plant DNA virus—requirement for efficient viral-DNA replication. EMBO J 14:4073–4082
Yamashita S, Nonaka N, Namba S, Doi Y, Yora K (1985) Miscanthus streak virus, a geminivirus in Miscanthus sacchariflorus. Ann Phytopathol Soc Jpn 51:582–590
Zhang Z, Schwartz S, Wagner L, Miller W (2000) A greedy algorithm for aligning DNA sequences. J Comput Biol 7:203–214
Acknowledgments
This work was funded by a grant from the National Foundation of Science of South Africa and a University of Cape Town block grant awarded to AV. PL is funded by GIS CRVOI through the EmerGe grant (N°PRAO/AIRD/CRVOI/08/03).
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Martin, D.P., Linderme, D., Lefeuvre, P. et al. Eragrostis minor streak virus: an Asian streak virus in Africa. Arch Virol 156, 1299–1303 (2011). https://doi.org/10.1007/s00705-011-1026-8
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DOI: https://doi.org/10.1007/s00705-011-1026-8