Key message
Varying stand density was the principal factor altering bacterial diversity compared to soil properties. Soil bacteria with a higher alpha diversity were present in low stand density.
Absract
Different land-use patterns and silvicultural practices contribute to the shifting composition and assemblage of soil bacterial communities. Positive plant and soil responses to nutrient acquisition, promotion of sustainable growth, resistance to biotic and abiotic stress, and disease suppression depend on favorable interactions between plant roots and microbes. This study investigated the community assemblage of soil bacteria and its interaction with soil quality indicators and canopy growth parameters (e.g., mean tilt angle of the leaf (MTA), leaf area index (LAI), and canopy openness index (DIFN)) in low, intermediate and high density stands of Chinese fir plantation at two soil depths (0–20 and 20–40 cm). The results showed that the soils of the low-density stand had higher α-bacterial diversity than the soils of medium and high-density forests. Among all variables, Acidobacteria was the most dominant phylum with 24.72%, followed by Actinobacteria, Proteobacteria and Chloroflexi with 20.41%, 15.89%, 11.67%, respectively. Among different canopy parameters, low-density associated bacterial diversity was positively correlated with the canopy openness index. Among soil properties, potassium, nitrogen, and phosphorus were considerably influential factors to bacterial communities. Redundancy analysis (RDA) results showed that soil physiochemical properties accounted for 31.86% of the total migration of the soil bacterial communities. Although soil attributes were the significant contributing factors affecting bacterial communities, varying stand density was the main factor altering bacterial diversity. By revealing changes in soil bacterial relative abundance and richness patterns at different levels of stand density, this study would provide comprehensive proof of the complexity of belowground ecology. It will also serve as a foundation for developing sustainable management strategies in silty oxisol soil types and plantation crops.
Similar content being viewed by others
Availability of data and materials
All the data is presented in the Ms and supplementary materials.
Change history
22 March 2022
A Correction to this paper has been published: https://doi.org/10.1007/s00468-022-02289-x
References
Barron-Gafford GA, Will RE, Colter Burkes E, Shiver B, Teskey RO (2003) Nutrient concentrations and contents, and their relation to stem growth, of intensively managed Pinus taeda and Pinus elliottii stands of different planting densities. For Sci 49:291–300
Barrios E (2007) Soil biota, ecosystem services and land productivity. Ecol Econ 64:269–285
Buajan S, Jinfu L, Zhongsheng H, Xueping F, Muhammad A, Farooq TH (2016) Effect of gap size on the dynamic of micro environments during the daytime at Castanopsis kawakamii Natural Reserve Forest, Sanming City, China. Environ Nat Resour J 14:30–43
Calleja-Cervantes ME, Menéndez S, Fernández‐González AJ, Irigoyen I, Cibriain‐Sabalza JF, Toro N, Aparicio‐Tejo PM, Fernández‐López M (2015) Changes in soil nutrient content and bacterial community after 12 years of organic amendment application to a vineyard. Eur J Soil Sci 66:802–812
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336
Dai Z, Su W, Chen H, Barberán A, Zhao H, Yu M, Yu L, Brookes PC, Schadt CW, Chang SX, Xu J (2018) Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agroecosystems across the globe. Glob Change Biol 24:3452–3461
Farooq TH, Tigabu M, Ma X, Zou X, Liu A, Odén PC, Wu P (2018) Nutrient uptake, allocation and biochemical changes in two Chinese fir cuttings under heterogeneous phosphorus supply. Iforest 11(3):411
Farooq TH, Wu W, Tigabu M, Ma X, He Z, Rashid MH, Gilani MM, Wu P (2019a) Growth, biomass production and root development of Chinese fir in relation to initial planting density. Forests 10:236
Farooq TH, Ma X, Rashid MH, Wu W, Xu J, Tarin MW, He Z, Wu P (2019b) Impact of stand density on soil quality in Chinese Fir (Cunninghamia Lanceolata) monoculture. Appl Ecol Environ Res 17:3553–3566
Farooq TH, Yan W, Rashid MH, Tigabu M, Gilani MM, Zou XH, Wu PF (2019c) Chinese fir (Cunninghamia lanceolata) a green gold of China with continues decline in its productivity over the successive rotations: a review. Appl Ecol Environ Res 17:11055–11067
Farooq TH, Yan W, Chen X, Shakoor A, Rashid MH, Gilani MM, He Z, Wu P (2020) Dynamics of canopy development of Cunninghamia lanceolata mid-age plantation in relation to foliar nitrogen and soil quality influenced by stand density. Glob Ecol Conserv 24:01209
Farooq TH, Kumar U, Shakoor A, Albasher G, Alkahtani S, Rizwana H, Tayyab M, Dobaria J, Hussain MI, Wu P (2021) Influence of intraspecific competition stress on soil fungal diversity and composition in relation to tree growth and soil fertility in sub-tropical soils under chinese fir monoculture. Sustainability 13:10688
Farooq TH, Shakoor A, Wu X, Li Y, Rashid MH, Zhang X, Gilani MM, Kumar U, Chen X, Yan W (2021b) Perspectives of plantation forests in the sustainable forest development of China. iForest 14:166
Farooq TH, Chen X, Shakoor A, Li Y, Wang J, Rashid MH, Kumar U, Yan W (2021c) Unraveling the influence of land-use change on δ13C, δ15N, and soil nutritional status in coniferous, broadleaved, and mixed forests in southern china: a field investigation. Plants 10:1499
Griffith RI, Thomson BC, James P, Bell T, Bailey M, Whiteley AS (2011) The bacterial biogeography of British soils. Environ Microbiol 13:1642–1654
Kaiser C, Koranda M, Kitzler B, Fuchslueger L, Schnecker J, Schweiger P, Rasche F, Zechmeister-Boltenstern S, Sessitsch A, Richter A (2010) Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil. New Phytol 187:843–858
Lauber CL, Strickland MS, Bradford MA, Fierer N (2008) The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol Biochem 40:2407–2415
Lauber CL, Hamady M, Knight R, Fierer N (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75:5111–5120
Lei J, Du H, Duan A, Zhang J (2019) Effect of stand density and soil layer on soil nutrients of a 37-year-old Cunninghamia lanceolata plantation in Naxi, Sichuan Province, China. Sustainability 11:5410
Li Y, Zhang T, Shi M, Zhang B, Hu X, Xu S, Ding J, Liu S, Hu D, Rubenstein D (2021) Characterization of intestinal microbiota and fecal cortisol, T3, and IgA in forest musk deer (Moschus berezovskii) from birth to weaning. Integr 16:300–312
Liu X, Wang Y, Liu Y, Chen H, Hu Y (2020) Response of bacterial and fungal soil communities to Chinese fir (Cunninghamia lanceolate) long-term monoculture plantations. Front Microbiol 11:181
Long XE, Yao H, Huang Y, Wei W, Zhu YG (2018) Phosphate levels influence the utilisation of rice rhizodeposition carbon and the phosphate-solubilising microbial community in a paddy soil. Soil Biol Biochem 118:103–114
Lungu M (2019) Effect of Ridging and Mulching on Soil Moisture, Rainwater use Efficiency and Maizeyield in Lundazi, Zambia (Doctoral dissertation, The University of Zambia)
Ma B, Cai Y, Bork EW, Chang SX (2018) Defoliation intensity and elevated precipitation effects on microbiome and interactome depend on site type in northern mixed-grass prairie. Soil Biol Biochem 122:163–172
Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963
Orkin JD, Campos FA, Myers MS, Hernandez SE, Guadamuz A, Melin AD (2019) Seasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest. ISME 13:183–196
Pereira AP, Andrade PA, Bini D, Durrer A, Robin A, Bouillet JP, Andreote FD, Cardoso EJ (2017) Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium. PLoS ONE 12:e0180371
Qiu J, Cao J, Lan G, Liang Y, Wang H, Li Q (2020) The influence of land use patterns on soil bacterial community structure in the karst graben basin of Yunnan province, China. Forests 11:51
Rashid MHU, Tigabu M, Chen H, Farooq TH, Ma X, Wu P (2020) Calcium-mediated adaptive responses to low phosphorus stress in Chinese fir. Trees 34:825–834
Ren B, Hu Y, Chen B, Zhang Y, Thiele J, Shi R, Liu M, Bu R (2018) Soil pH and plant diversity shape soil bacterial community structure in the active layer across the latitudinal gradients in continuous permafrost region of Northeastern China. Sci Rep 8:1–10
Sagova-Mareckova M, Cermak L, Novotna J, Plhackova K, Forstova J, Kopecky J (2008) Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl Environ Microbiol 74:2902–2907
Senbayram M, Saygan EP, Chen R, Aydemir S, Kaya C, Wu D, Bladogatskaya E (2019) Effect of biochar origin and soil type on the greenhouse gas emission and the bacterial community structure in N fertilized acidic sandy and alkaline clay soil. Sci Total Environ 660:69–79
Shakoor A, Shakoor S, Rehman A, Ashraf F, Abdullah M, Shahzad SM, Farooq TH, Ashraf M, Manzoor MA, Altaf M, Altaf MA (2020) Effect of animal manure, crop type, climate zone, and soil attributes on greenhouse gas emissions from agricultural soils—A global meta-analysis. J Clean Prod 4:124019
Shakoor A, Shahzad SM, Chatterjee N, Arif MS, Farooq TH, Altaf MM, Tufail MA, Dar AA, Mehmood T (2021) Nitrous oxide emission from agricultural soils: Application of animal manure or biochar? A global meta-analysis. J Environ Manage 285:e112170
Shannon CE (2001) A mathematical theory of communication. ACM SIGMOBILE mobile computing and communications review 5:3–55
Tayyab M, Islam W, Arafat Y, Pang Z, Zhang C, Lin Y, Waqas M, Lin S, Lin W, Zhang H (2018) Effect of sugarcane straw and goat manure on soil nutrient transformation and bacterial communities. Sustainability 10:2361
Tayyab M, Yang Z, Zhang C, Islam W, Lin W, Zhang H (2021) Sugarcane monoculture drives microbial community composition, activity and abundance of agricultural-related microorganisms. Environ Sci Pollut Res 26:1–7
Tian D, Xiang W, Chen X, Yan W, Fang X, Kang W, Dan X, Peng C, Peng Y (2011) A long-term evaluation of biomass production in first and second rotations of Chinese fir plantations at the same site. Forestry 84:411–418
Wang Q, Wang C, Yu W, Turak A, Chen D, Huang Y, Ao J, Jiang Y, Huang Z (2018) Effects of nitrogen and phosphorus inputs on soil bacterial abundance, diversity, and community composition in Chinese fir plantations. Front Microbiol 9:1543
Wu P, Wang G, Farooq TH, Li Q, Zou X, Ma X (2017) Low phosphorus and competition affect Chinese fir cutting growth and root organic acid content: does neighboring root activity aggravate P nutrient deficiency? J Soil Sediment 17:2775–2785
Wuyts K, Smets W, Lebeer S, Samson R (2020) Green infrastructure and atmospheric pollution shape diversity and composition of phyllosphere bacterial communities in an urban landscape. FEMS Microb Ecol 96:173
Xiao X, Liang Y, Zhou S, Zhuang S, Sun B (2018) Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils. Mol Ecol 27:550–563
Yan Y, Li B, Huang Z, Zhang H, Wu X, Farooq TH, Wu P, Li M, Ma X (2021) Characteristics and driving factors of rhizosphere bacterial communities of Chinese Fir Provenances. Forests 10:1362
Zhang C, Tayyab M, Abubakar AY, Yang Z, Pang Z, Islam W, Lin Z, Li S, Luo J, Fan X, Fallah N (2019) Bacteria with different assemblages in the soil profile drive the diverse nutrient cycles in the sugarcane straw retention ecosystem. Diversity 11:194
Zhou Z, Wang C, Luo Y (2020) Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality. Nat Commun 11:1–10
Acknowledgements
We thank our friend Chris Ijeoma for the English language and grammar checking of the manuscript. We would also like to thank Xiang Zhang, Xu Jinjin and Wu Kai for their help in conducting fieldwork. This work was funded by hunan provincial science and technology department (No. 70702-45200003).
Funding
This research was financially supported by the Key Program of Natural Science of Fujian Province, China (Grant No. 2020JO2029), Science and Technology Promotion Project of Fujian Forestry Bureau (2020TG19) and the Project of Fujian Provincial Colleges and University Engineering Research Center of Plantation Sustainable management (PTJH18009).
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Conflict of interest
The authors declare that they have no known competing financial or personal interests.
Additional information
Communicated by N. Feau.
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic Supplementary Material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Farooq, T.H., Kumar, U., Yan, Y. et al. Receptiveness of soil bacterial diversity in relation to soil nutrient transformation and canopy growth in Chinese fir monoculture influenced by varying stand density. Trees 36, 1149–1160 (2022). https://doi.org/10.1007/s00468-022-02278-0
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00468-022-02278-0