Abstract
Zinc finger transcription factors encoded by hunchback homologs play different roles in arthropods, including maternally mediated control, segmentation, and mesoderm and neural development. Knockdown experiments in spider and insect embryos have also revealed homeotic effects and gap phenotypes, the latter indicating a function of hunchback as a “gap gene”. Although the expression pattern of hunchback has been analysed in representatives of all four major arthropod groups (chelicerates, myriapods, crustaceans and insects), nothing is known about its expression in one of the closest arthropod relatives, the Onychophora (velvet worms). We therefore examined the expression pattern of hunchback in embryos of the onychophoran Euperipatoides rowelli. Our transcriptomic and phylogenetic analyses revealed only one hunchback ortholog in this species. The putative Hunchback protein contains all nine zinc finger domains known from other protostomes. We found no indication of maternally contributed transcripts of hunchback in early embryos of E. rowelli. Its initial expression occurs in the ectodermal tissue of the antennal segment, followed by the jaw, slime papilla and trunk segments in an anterior-to-posterior progression. Later, hunchback expression is seen in the mesoderm of the developing limbs. A second “wave” of expression commences later in development in the antennal segment and continues posteriorly along each developing nerve cord. This expression is restricted to the neural tissues and does not show any segmental pattern. These findings are in line with the ancestral roles of hunchback in mesoderm and neural development, whereas we find no evidence for a putative function of hunchback as a “gap gene” in Onychophora.
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References
Akaike H (1974) A new look at the statistical model identification. IEEE Trans Autom Control 19:716–723. doi:10.1109/tac.1974.1100705
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402. doi:10.1093/nar/25.17.3389
Baer A, Mayer G (2012) Comparative anatomy of slime glands in Onychophora (velvet worms). J Morphol 273:1079–1088. doi:10.1002/jmor.20044
Chang CC, Hsiao YM, Huang TY, Cook CE, Shigenobu S, Chang TH (2013) Noncanonical expression of caudal during early embryogenesis in the pea aphid Acyrthosiphon pisum: maternal cad-driven posterior development is not conserved. Insect Mol Biol 22:442–455. doi:10.1111/imb.12035
Chipman AD, Stollewerk A (2006) Specification of neural precursor identity in the geophilomorph centipede Strigamia maritima. Dev Biol 290:337–350. doi:10.1016/j.ydbio.2005.11.029
Crombach A, García-Solache MA, Jaeger J (2014) Evolution of early development in dipterans: reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae). BioSystems 123:74–85. doi:10.1016/j.biosystems.2014.06.003
Darriba D, Taboada GL, Doallo R, Posada D (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164−1165
Dean D, Himes CM, Behrman E, Savage RM (2009) Hunchback-like protein is expressed in cleavage blastomeres, gastrula epithelium, and ciliary structures in gastropods. Biol Bull 217:189–201
Duncan EJ, Leask MP, Dearden PK (2013) The pea aphid (Acyrthosiphon pisum) genome encodes two divergent early developmental programs. Dev Biol 377:262–274. doi:10.1016/j.ydbio.2013.01.036
Eriksson BJ, Stollewerk A (2010) Expression patterns of neural genes in Euperipatoides kanangrensis suggest divergent evolution of onychophoran and euarthropod neurogenesis. Proc Natl Acad Sci U S A 107:22576–22581. doi:10.1073/pnas.1008822108
Eriksson BJ, Tait NN, Budd GE, Akam M (2009) The involvement of engrailed and wingless during segmentation in the onychophoran Euperipatoides kanangrensis (Peripatopsidae: Onychophora) (Reid 1996). Dev Genes Evol 219:249–264. doi:10.1007/s00427-009-0287-7
Fay DS, Stanley HM, Han M, Wood WB (1999) A Caenorhabditis elegans homologue of hunchback is required for late stages of development but not early embryonic patterning. Dev Biol 205:240–253. doi:10.1006/dbio.1998.9096
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer ELL, Tate J, Punta M (2014) Pfam: the protein families database. Nucleic Acids Res 42:D222–D230. doi:10.1093/nar/gkt1223
Franke FA, Mayer G (2014) Controversies surrounding segments and parasegments in Onychophora: insights from the expression patterns of four “segment polarity genes” in the peripatopsid Euperipatoides rowelli. PLoS ONE 9, e114383. doi:10.1371/journal.pone.0114383
Franke FA, Schumann I, Hering L, Mayer G (2015) Phylogenetic analysis and expression patterns of Pax genes in the onychophoran Euperipatoides rowelli reveal a novel bilaterian Pax subfamily. Evol Dev 17:3–20. doi:10.1111/ede.12110
Georgopoulos K, Moore D, Derfler B (1992) Ikaros, an early lymphoid-specific transcription factor and a putative mediator for T cell commitment. Science 258:808–812. doi:10.1126/science.1439790
Goltsev Y, Hsiong W, Lanzaro G, Levine M (2004) Different combinations of gap repressors for common stripes in Anopheles and Drosophila embryos. Dev Biol 275:435–446. doi:10.1016/j.ydbio.2004.08.021
He Z-B, Cao Y-Q, Yin Y-P, Wang Z-K, Chen B, Peng G-X, Xia Y-X (2006) Role of hunchback in segment patterning of Locusta migratoria manilensis revealed by parental RNAi. Develop Growth Differ 48:439–445. doi:10.1111/j.1440-169X.2006.00881.x
Hering L, Henze MJ, Kohler M, Kelber A, Bleidorn C, Leschke M, Nickel B, Meyer M, Kircher M, Sunnucks P, Mayer G (2012) Opsins in Onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods. Mol Biol Evol 29:3451–3458. doi:10.1093/molbev/mss148
Huang TY, Cook CE, Davis GK, Shigenobu S, Chen RPY, Chang CC (2010) Anterior development in the parthenogenetic and viviparous form of the pea aphid, Acyrthosiphon pisum: hunchback and orthodenticle expression. Insect Mol Biol 19:75–85. doi:10.1111/j.1365-2583.2009.00940.x
Isshiki T, Pearson B, Holbrook S, Doe CQ (2001) Drosophila neuroblasts sequentially express transcription factors which specify the temporal identity of their neuronal progeny. Cell 106:511–521. doi:10.1016/S0092-8674(01)00465-2
Iwasa JH, Suver DW, Savage RM (2000) The leech hunchback protein is expressed in the epithelium and CNS but not in the segmental precursor lineages. Dev Genes Evol 210:277–288. doi:10.1007/s004270050315
Janssen R, Budd GE, Damen WGM (2011) Gene expression suggests conserved mechanisms patterning the heads of insects and myriapods. Dev Biol 357:64–72. doi:10.1016/j.ydbio.2011.05.670
Janssens H, Siggens K, Cicin-Sain D, Jimenez-Guri E, Musy M, Akam M, Jaeger J (2014) A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos. EvoDevo 5:1
Kambadur R, Koizumi K, Stivers C, Nagle J, Poole SJ, Odenwald WF (1998) Regulation of POU genes by castor and hunchback establishes layered compartments in the Drosophila CNS. Genes Dev 12:246–260. doi:10.1101/gad.12.2.246
Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. doi:10.1093/molbev/mst010
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059–3066. doi:10.1093/nar/gkf436
Kerner P, Zelada González F, Gouar M, Ledent V, Arendt D, Vervoort M (2006) The expression of a hunchback ortholog in the polychaete annelid Platynereis dumerilii suggests an ancestral role in mesoderm development and neurogenesis. Dev Genes Evol 216:821–828. doi:10.1007/s00427-006-0100-9
Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ (2010) BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Nucleic Acids Res 38:D437–D442. doi:10.1093/nar/gkp807
Kontarakis Z, Copf T, Averof M (2006) Expression of hunchback during trunk segmentation in the branchiopod crustacean Artemia franciscana. Dev Genes Evol 216:89–93. doi:10.1007/s00427-005-0030-y
Lartillot N, Rodrigue N, Stubbs D, Richer J (2013) PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Syst Biol 62:611–615. doi:10.1093/sysbio/syt022
Lehmann R, Nüsslein-Volhard C (1987) hunchback, a gene required for segmentation of an anterior and posterior region of the Drosophila embryo. Dev Biol 119:402–417. doi:10.1016/0012-1606(87)90045-5
Letunic I, Bork P (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39:475–478. doi:10.1093/nar/gkr201
Letunic I, Doerks T, Bork P (2014) SMART: recent updates, new developments and status in 2015. Nucleic Acids Res. doi:10.1093/nar/gku949
Liu PZ, Kaufman TC (2004) hunchback is required for suppression of abdominal identity, and for proper germband growth and segmentation in the intermediate germband insect Oncopeltus fasciatus. Development 131:1515–1527. doi:10.1242/dev.01046
Mao J, Liu C, Zeng F (2013) Hunchback is required for abdominal identity suppression and germband growth in the parthenogenetic embryogenesis of the pea aphid, Acyrthosiphon pisum. Arch Insect Biochem Physiol 84:209–221. doi:10.1002/arch.21137
Marques-Souza H, Aranda M, Tautz D (2008) Delimiting the conserved features of hunchback function for the trunk organization of insects. Development 135:881–888. doi:10.1242/dev.018317
Mayer G, Whitington PM (2009) Velvet worm development links myriapods with chelicerates. Proc R Soc B 276:3571–3579. doi:10.1098/rspb.2009.0950
Mayer G, Franke FA, Treffkorn S, Gross V, Oliveira IS (2015) Onychophora. In: Wanninger A (ed) Evolutionary developmental biology of invertebrates. Springer, Berlin, p 53–98 (in press)
Mito T, Sarashina I, Zhang H, Iwahashi A, Okamoto H, Miyawaki K, Shinmyo Y, Ohuchi H, Noji S (2005) Non-canonical functions of hunchback in segment patterning of the intermediate germ cricket Gryllus bimaculatus. Development 132:2069–2079. doi:10.1242/dev.01784
Nüsslein-Volhard C, Wieschaus E (1980) Mutations affecting segment number and polarity in Drosophila. Nature 287:795–801. doi:10.1038/287795a0
Patel NH, Hayward DC, Lall S, Pirkl NR, DiPietro D, Ball EE (2001) Grasshopper hunchback expression reveals conserved and novel aspects of axis formation and segmentation. Development 128:3459–3472
Perdomo J, Crossley M (2002) The Ikaros family protein Eos associates with C-terminal-binding protein corepressors. Eur J Biochem 269:5885–5892. doi:10.1046/j.1432-1033.2002.03313.x
Pinnell J, Lindeman PS, Colavito S, Lowe C, Savage RM (2006) The divergent roles of the segmentation gene hunchback. Integr Comp Biol 46:519–532. doi:10.1093/icb/icj054
Pultz MA, Westendorf L, Gale SD, Hawkins K, Lynch J, Pitt JN, Reeves NL, Yao JCY, Small S, Desplan C, Leaf DS (2005) A major role for zygotic hunchback in patterning the Nasonia embryo. Development 132:3705–3715. doi:10.1242/dev.01939
Robson EA, Lockwood AP, Ralph R (1966) Composition of blood in Onychophora. Nature 209:533. doi:10.1038/209533a0
Savage RM, Shankland M (1996) Identification and characterization of a hunchback Orthologue, Lzf2, and its expression during leech embryogenesis. Dev Biol 175:205–217. doi:10.1006/dbio.1996.0108
Schröder R (2003) The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium. Nature 422:621–625. doi:10.1038/nature01536
Schultz J, Milpetz F, Bork P, Ponting CP (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci U S A 95:5857–5864
Schwager EE, Pechmann M, Feitosa NM, McGregor AP, Damen WGM (2009) hunchback functions as a segmentation gene in the spider Achaearanea tepidariorum. Curr Biol 19:1333–1340. doi:10.1016/j.cub.2009.06.061
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690. doi:10.1093/bioinformatics/btl446
Sullivan-Brown J, Bisher ME, Burdine RD (2011) Embedding, serial sectioning and staining of zebrafish embryos using JB-4 resin. Nat Protoc 6:46–55. doi:10.1038/nprot.2010.165
Tautz D, Pfeifle C (1989) A non-radioactive in situ hybridization method for the location of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98:81–85. doi:10.1007/bf00291041
Tautz D, Lehmann R, Schnurch H, Schuh R, Seifert E, Kienlin A, Jones K, Jäckle H (1987) Finger protein of novel structure encoded by hunchback, a second member of the gap class of Drosophila segmentation genes. Nature 327:383–389. doi:10.1038/327383a0
Treffkorn S, Mayer G (2013) Expression of the decapentaplegic ortholog in embryos of the onychophoran Euperipatoides rowelli. Gene Expr Patterns 13:384–394. doi:10.1016/j.gep.2013.07.004
Walker MH, Tait NN (2004) Studies of embryonic development and the reproductive cycle in ovoviviparous Australian Onychophora (Peripatopsidae). J Zool 264:333–354. doi:10.1017/s0952836904005837
Werbrock AH, Meiklejohn DA, Sainz A, Iwasa JH, Savage RM (2001) A polychaete hunchback ortholog. Dev Biol 235:476–488. doi:10.1006/dbio.2001.0272
Wheeler T, Clements J, Finn R (2014) Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinf 15:7. doi:10.1186/1471-2105-15-7
Whitington PM, Mayer G (2011) The origins of the arthropod nervous system: insights from the Onychophora. Arthropod Struct Dev 40:193–209. doi:10.1016/j.asd.2011.01.006
Wilson MJ, Dearden PK (2011) Diversity in insect axis formation: two orthodenticle genes and hunchback act in anterior patterning and influence dorsoventral organization in the honeybee (Apis mellifera). Development 138:3497–3507. doi:10.1242/dev.067926
Wolff C, Sommer R, Schroder R, Glaser G, Tautz D (1995) Conserved and divergent expression aspects of the Drosophila segmentation gene hunchback in the short germ band embryo of the flour beetle Tribolium. Development 121:4227–4236
Acknowledgments
We are thankful to the members of the Mayer laboratory for animal husbandry. We acknowledge Dave M. Rowell, Ivo de Sena Oliveira, Sandra Treffkorn and Michael Gerth for collecting specimens and to Noel N. Tait for his help with permits. We thank Lars Hering for providing transcriptomic data, Nicole Naumann and Isabell Schumann for laboratory support, Lars Hering and Michael Gerth for help with software applications, and Vladimir Gross for proofreading the manuscript and providing useful comments. The staff of Forests NSW (New South Wales, Australia) is gratefully acknowledged for providing the collecting permits. We thank the two anonymous reviewers for their helpful comments. This work was supported by the Emmy Noether Programme of the German Research Foundation (DFG; grant Ma 4147/3-1 to G.M.).
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Franke, F.A., Mayer, G. Expression study of the hunchback ortholog in embryos of the onychophoran Euperipatoides rowelli . Dev Genes Evol 225, 207–219 (2015). https://doi.org/10.1007/s00427-015-0505-4
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DOI: https://doi.org/10.1007/s00427-015-0505-4