Skip to main content
Log in

Physiological Regulation, Xenobiotic Induction, and Heterologous Expression of P450 Monooxygenase Gene pc-3 (CYP63A3), a New Member of the CYP63 Gene Cluster in the White-rot FungusPhanerochaete chrysosporium

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

In order to characterize the functional diversity in CYP63 cluster of tandemly linked P450 genes (pc-1, pc-2, and pc-3) in Phanerochaete chrysosporium, here we report the functional characterization of pc-3 (CYP63A3), a newly cloned member of this group. pc-3 expression was favored in nutrient-limited versus nutrient-rich media in 3–6-day-old cultures and was upregulated by starch as a carbon source or by oxygenation of cultures. pc-3 was induced by various xenobiotics in defined nutrient-limited (3–9-fold) and nutrient-rich (2–5-fold) cultures. Particularly, a range of unsubstituted and substituted aliphatic hydrocarbons (alkanes and fatty acids) induced the expression under the two nutrient conditions albeit in a differential manner. Interestingly, pc-3 was also inducible by certain oxygenated mono aromatics (nitrophenol, benzoate, and resorcinol), lower molecular weight (2 to 4 ring size) polycyclic aromatic hydrocarbons (PAHs) and alkali-treated lignin derivatives in nutrient-rich malt extract cultures. The study further establishes that the three CYP63 genes (CYP63A1, A2, and A3) are independently regulated despite being members of the tandem gene cluster with high gene structural similarity (13–14 introns) and protein sequence homology (59–85%). The pc-3 cDNA (1,812 bp) was expressed in E. coli as a His-tagged protein (∼ 74 kDa). This constitutes the first report on heterologous expression of a P450 monooxygenase enzyme from this model white-rot fungus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Literature Cited

  1. P Anzenbacher E Anzenbacherova (2001) ArticleTitleCytochrome P450 and metabolism of xenobiotics Cell Mol Life Sci 58 737–747 Occurrence Handle1:CAS:528:DC%2BD3MXlt1ait7g%3D Occurrence Handle11437235

    CAS  PubMed  Google Scholar 

  2. D Cullen (1997) ArticleTitleRecent advances on the molecular genetics of ligninolytic fungi J Biotechnol 53 273–289 Occurrence Handle1:CAS:528:DyaK2sXjvVWltr8%3D Occurrence Handle9177046

    CAS  PubMed  Google Scholar 

  3. H Doddapaneni JS Yadav (2004) ArticleTitleDifferential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white-rot fungus Phanerochaete chrysosporium Appl Microbiol Biotechnol 65 559–565 Occurrence Handle1:CAS:528:DC%2BD2cXns1eqsrc%3D Occurrence Handle15378295

    CAS  PubMed  Google Scholar 

  4. MH Gold M Alic (1993) ArticleTitleMolecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium Microbiol Rev 57 605–622 Occurrence Handle1:CAS:528:DyaK3sXmsVGjs7s%3D Occurrence Handle8246842

    CAS  PubMed  Google Scholar 

  5. SW Kullman F Matsumura (1996) ArticleTitleMetabolic pathways utilized by Phanerochaete chrysosporium for degradation of the cyclodiene pesticide endosulfan Appl Environ Microbiol 62 593–600 Occurrence Handle1:CAS:528:DyaK28XovVCrsQ%3D%3D Occurrence Handle8593059

    CAS  PubMed  Google Scholar 

  6. DF Lewis (2000) ArticleTitleOn the recognition of mammalian microsomal cytochrome P450 substrates and their characteristics: towards the prediction of human P450 substrate specificity and metabolism Biochem Pharmacol 60 293–306 Occurrence Handle1:CAS:528:DC%2BD3cXktVSmsLo%3D Occurrence Handle10856424

    CAS  PubMed  Google Scholar 

  7. D Martinez LF Larrondo N Putnam MD Gelpke K Huang J Chapman KG Helfenbein P Ramaiya JC Detter F Larimer PM Coutinho B Henrissat R Berka D Cullen D Rokhsar (2004) ArticleTitleGenome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 Nat Biotech 22 695–700 Occurrence Handle1:CAS:528:DC%2BD2cXksV2gtro%3D

    CAS  Google Scholar 

  8. DR Nelson L Koymans T Kamataki JJ Stegeman R Feyereisen DJ Waxman MR Waterman O Gotoh MJ Coon RW Estabrook IC Gunsalus DW Nebert (1996) ArticleTitleP450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature Pharmacogenetics 6 1–42 Occurrence Handle1:CAS:528:DyaK28XisFyhsLg%3D Occurrence Handle8845856

    CAS  PubMed  Google Scholar 

  9. AB Orth M Tien (1995) Biotechnology of lignin degradation U Kuck (Eds) The Mycota II. Genetics and biotechnology Springer-Verlag Berlin 287–302

    Google Scholar 

  10. ML Rabinovich AV Bolobova LG Vasil’chenko (2004) ArticleTitleFungal decomposition of natural aromatic structures and xenobiotics: A review Appl Biochem Microbiol 40 1–17 Occurrence Handle1:CAS:528:DC%2BD3sXhtVWhtbjO

    CAS  Google Scholar 

  11. CA Reddy (1995) ArticleTitleThe potential of white rot fungi for the treatment of pollutants Curr Opin Biotechnol 6 320–328 Occurrence Handle1:CAS:528:DyaK2MXlvFOrsbo%3D

    CAS  Google Scholar 

  12. D Sanglard C Chen JC Loper (1987) ArticleTitleIsolation of alkane inducible cytochrome P450 (P450alk) gene from the yeast Candida tropicalis Biochem Biophys Res Commun 144 251–257 Occurrence Handle1:CAS:528:DyaL2sXitVyksro%3D Occurrence Handle3579905

    CAS  PubMed  Google Scholar 

  13. D Sanglard JC Loper (1989) ArticleTitleCharacterization of the alkane-inducible cytochrome P450 (P450alk) gene from the yeast Candida tropicalis: identification of a new P450 gene family Gene 76 121–136 Occurrence Handle1:CAS:528:DyaL1MXlvVymtL8%3D Occurrence Handle2663647

    CAS  PubMed  Google Scholar 

  14. JB Sutherland AL Selby JP Freeman FE Evans CE Cerniglia (1991) ArticleTitleMetabolism of phenanthrene by Phanerochaete chrysosporium Appl Environ Microbiol 57 3310–3316 Occurrence Handle1:CAS:528:DyaK38XhvVajsA%3D%3D Occurrence Handle1781688

    CAS  PubMed  Google Scholar 

  15. R Whitwam M Tien (1996) ArticleTitleHeterologous expression and reconstitution of fungal Mn peroxidase Arch Biochem Biophys 333 439–446 Occurrence Handle1:CAS:528:DyaK28XlslSiu7g%3D Occurrence Handle8809085

    CAS  PubMed  Google Scholar 

  16. JS Yadav JC Loper (1999) ArticleTitleMultiple P450alk (cytochrome P450 alkane hydroxylase) genes from the halotolerant yeast Debaryomyces hansenii Gene 226 139–146 Occurrence Handle1:CAS:528:DyaK1MXhtFant7w%3D Occurrence Handle9931473

    CAS  PubMed  Google Scholar 

  17. JS Yadav JC Loper (2000) ArticleTitleCytochrome P450 oxidoreductase gene and its differentially terminated cDNAs from the white rot fungus Phanerochaete chrysosporium Curr Genet 37 65–73 Occurrence Handle1:CAS:528:DC%2BD3cXitFaqtw%3D%3D Occurrence Handle10672447

    CAS  PubMed  Google Scholar 

  18. JS Yadav D Lawrence B Nuck T Federle CA Reddy (2001) ArticleTitleBiotransformation of linear alkylbenzene sulfonate (LAS) by Phanerochaete chrysosporium: oxidation of alkyl side-chain Biodegradation 12 443–453 Occurrence Handle1:CAS:528:DC%2BD38Xltlelu7o%3D Occurrence Handle12051650

    CAS  PubMed  Google Scholar 

  19. JS Yadav CA Reddy (1992) ArticleTitleNon-involvement of lignin peroxidases and manganese peroxidases in 2,4,5-trichlorophenoxyacetic acid degradation in Phanerochaete chrysosporium Biotechnol Lett 14 1089–1092 Occurrence Handle1:CAS:528:DyaK3sXlsFyltA%3D%3D

    CAS  Google Scholar 

  20. JS Yadav MB Soellner JC Loper PK Mishra (2003) ArticleTitleTandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression Fungal Genet Biol 38 10–21 Occurrence Handle1:CAS:528:DC%2BD3sXmt1Wgtg%3D%3D Occurrence Handle12553932

    CAS  PubMed  Google Scholar 

Download references

Acknowledgment

This work was supported by the NIH’s National Institute of Environmental Health Sciences (NIEHS) grant R01-ES10210 (J.S.Y.).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jagjit S. Yadav.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Doddapaneni, H., Subramanian, V. & Yadav, J.S. Physiological Regulation, Xenobiotic Induction, and Heterologous Expression of P450 Monooxygenase Gene pc-3 (CYP63A3), a New Member of the CYP63 Gene Cluster in the White-rot FungusPhanerochaete chrysosporium. Curr Microbiol 50, 292–298 (2005). https://doi.org/10.1007/s00284-005-4480-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-005-4480-2

Keywords

Navigation