Skip to main content

Advertisement

Log in

Class II MHC antigen processing in immune tolerance and inflammation

  • Review
  • Published:
Immunogenetics Aims and scope Submit manuscript

Abstract

Presentation of peptide antigens by MHC-II proteins is prerequisite to effective CD4 T cell tolerance to self and to recognition of foreign antigens. Antigen uptake and processing pathways as well as expression of the peptide exchange factors HLA-DM and HLA-DO differ among the various professional and non-professional antigen-presenting cells and are modulated by cell developmental state and activation. Recent studies have highlighted the importance of these cell-specific factors in controlling the source and breadth of peptides presented by MHC-II under different conditions. During inflammation, increased presentation of selected self-peptides has implications for maintenance of peripheral tolerance and autoimmunity.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Abrahimi P, Qin L, Chang WG, Bothwell AL, Tellides G, Saltzman WM, Pober JS (2016) Blocking MHC class II on human endothelium mitigates acute rejection. JCI Insight 1

  • Adamopoulou E, Tenzer S, Hillen N, Klug P, Rota IA, Tietz S, Gebhardt M, Stevanovic S, Schild H, Tolosa E, Melms A, Stoeckle C (2013) Exploring the MHC-peptide matrix of central tolerance in the human thymus. Nat Commun 4:2039

    Article  CAS  PubMed  Google Scholar 

  • Adler LN, Jiang W, Bhamidipati K, Millican M, Macaubas C, Hung SC, Mellins ED (2017) The other function: class II-restricted antigen presentation by B cells. Front Immunol 8:319

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Aichinger M, Wu C, Nedjic J, Klein L (2013) Macroautophagy substrates are loaded onto MHC class II of medullary thymic epithelial cells for central tolerance. J Exp Med 210:287–300

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Alfonso C, Williams GS, Han JO, Westberg JA, Winqvist O, Karlsson L (2003) Analysis of H2-O influence on antigen presentation by B cells. J Immunol 171:2331–2337

    Article  CAS  PubMed  Google Scholar 

  • Allavena P, Chieppa M, Monti P, Piemonti L (2004) From pattern recognition receptor to regulator of homeostasis: the double-faced macrophage mannose receptor. Crit Rev Immunol 24:179–192

    Article  CAS  PubMed  Google Scholar 

  • Alonso S, Pethe K, Russell DG, Purdy GE (2007) Lysosomal killing of Mycobacterium mediated by ubiquitin-derived peptides is enhanced by autophagy. Proc Natl Acad Sci U S A 104:6031–6036

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Alvaro-Benito M, Morrison E, Abualrous ET, Kuropka B, Freund C (2018) Quantification of HLA-DM-dependent major histocompatibility complex of class II immunopeptidomes by the peptide landscape antigenic epitope alignment utility. Front Immunol 9:872

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Anders AK, Call MJ, Schulze MS, Fowler KD, Schubert DA, Seth NP, Sundberg EJ, Wucherpfennig KW (2011) HLA-DM captures partially empty HLA-DR molecules for catalyzed removal of peptide. Nat Immunol 12:54–61

    Article  CAS  PubMed  Google Scholar 

  • Arunachalam B, Phan UT, Geuze HJ, Cresswell P (2000) Enzymatic reduction of disulfide bonds in lysosomes: characterization of a gamma-interferon-inducible lysosomal thiol reductase (GILT). Proc Natl Acad Sci U S A 97:745–750

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Aschenbrenner K, D'Cruz LM, Vollmann EH, Hinterberger M, Emmerich J, Swee LK, Rolink A, Klein L (2007) Selection of Foxp3+ regulatory T cells specific for self antigen expressed and presented by Aire+ medullary thymic epithelial cells. Nat Immunol 8:351–358

    Article  CAS  PubMed  Google Scholar 

  • Babon JA, DeNicola ME, Blodgett DM, Crevecoeur I, Buttrick TS, Maehr R, Bottino R, Naji A, Kaddis J, Elyaman W, James EA, Haliyur R, Brissova M, Overbergh L, Mathieu C, Delong T, Haskins K, Pugliese A, Campbell-Thompson M, Mathews C, Atkinson MA, Powers AC, Harlan DM, Kent SC (2016) Analysis of self-antigen specificity of islet-infiltrating T cells from human donors with type 1 diabetes. Nat Med 22:1482–1487

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bania J, Gatti E, Lelouard H, David A, Cappello F, Weber E, Camosseto V, Pierre P (2003) Human cathepsin S, but not cathepsin L, degrades efficiently MHC class II-associated invariant chain in nonprofessional APCs. Proc Natl Acad Sci U S A 100:6664–6669

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barascuk N, Skjot-Arkil H, Register TC, Larsen L, Byrjalsen I, Christiansen C, Karsdal MA (2010) Human macrophage foam cells degrade atherosclerotic plaques through cathepsin K mediated processes. BMC Cardiovasc Disord 10:19

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barrera C, Ye G, Espejo R, Gunasena S, Almanza R, Leary J, Crowe S, Ernst P, Reyes VE (2001) Expression of cathepsins B, L, S, and D by gastric epithelial cells implicates them as antigen presenting cells in local immune responses. Hum Immunol 62:1081–1091

    Article  CAS  PubMed  Google Scholar 

  • Baumgart M, Moos V, Schuhbauer D, Muller B (1998) Differential expression of major histocompatibility complex class II genes on murine macrophages associated with T cell cytokine profile and protective/suppressive effects. Proc Natl Acad Sci U S A 95:6936–6940

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Beers C, Honey K, Fink S, Forbush K, Rudensky A (2003) Differential regulation of cathepsin S and cathepsin L in interferon gamma-treated macrophages. J Exp Med 197:169–179

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Beers C, Burich A, Kleijmeer MJ, Griffith JM, Wong P, Rudensky AY (2005) Cathepsin S controls MHC class II-mediated antigen presentation by epithelial cells in vivo. J Immunol 174:1205–1212

    Article  CAS  PubMed  Google Scholar 

  • Belkaid Y (2007) Regulatory T cells and infection: a dangerous necessity. Nat Rev Immunol 7:875–888

    Article  CAS  PubMed  Google Scholar 

  • Benoist C, Mathis D (2012) Treg cells, life history, and diversity. Cold Spring Harb Perspect Biol 4:a007021

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bergmann H, Yabas M, Short A, Miosge L, Barthel N, Teh CE, Roots CM, Bull KR, Jeelall Y, Horikawa K, Whittle B, Balakishnan B, Sjollema G, Bertram EM, Mackay F, Rimmer AJ, Cornall RJ, Field MA, Andrews TD, Goodnow CC, Enders A (2013) B cell survival, surface BCR and BAFFR expression, CD74 metabolism, and CD8- dendritic cells require the intramembrane endopeptidase SPPL2A. J Exp Med 210:31–40

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bergseng E, Dorum S, Arntzen MO, Nielsen M, Nygard S, Buus S, de Souza GA, Sollid LM (2015) Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires. Immunogenetics 67:73–84

    Article  CAS  PubMed  Google Scholar 

  • Blander JM, Medzhitov R (2006) Toll-dependent selection of microbial antigens for presentation by dendritic cells. Nature 440:808–812

    Article  CAS  PubMed  Google Scholar 

  • Blum JS, Wearsch PA, Cresswell P (2013) Pathways of antigen processing. Annu Rev Immunol 31:443–473

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bosedasgupta S, Pieters J (2014) Inflammatory stimuli reprogram macrophage phagocytosis to macropinocytosis for the rapid elimination of pathogens. PLoS Pathog 10:e1003879

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brazil MI, Weiss S, Stockinger B (1997) Excessive degradation of intracellular protein in macrophages prevents presentation in the context of major histocompatibility complex class II molecules. Eur J Immunol 27:1506–1514

    Article  CAS  PubMed  Google Scholar 

  • Burster T, Beck A, Tolosa E, Marin-Esteban V, Rotzschke O, Falk K, Lautwein A, Reich M, Brandenburg J, Schwarz G, Wiendl H, Melms A, Lehmann R, Stevanovic S, Kalbacher H, Driessen C (2004) Cathepsin G, and not the asparagine-specific endoprotease, controls the processing of myelin basic protein in lysosomes from human B lymphocytes. J Immunol 172:5495–5503

    Article  CAS  PubMed  Google Scholar 

  • Burster T, Beck A, Tolosa E, Schnorrer P, Weissert R, Reich M, Kraus M, Kalbacher H, Haring HU, Weber E, Overkleeft H, Driessen C (2005) Differential processing of autoantigens in lysosomes from human monocyte-derived and peripheral blood dendritic cells. J Immunol 175:5940–5949

    Article  CAS  PubMed  Google Scholar 

  • Burster T, Reich M, Zaidi N, Voelter W, Boehm BO, Kalbacher H (2008) Cathepsin E regulates the presentation of tetanus toxin C-fragment in PMA activated primary human B cells. Biochem Biophys Res Commun 377:1299–1303

    Article  CAS  PubMed  Google Scholar 

  • Busch R, De Riva A, Hadjinicolaou AV, Jiang W, Hou T, Mellins ED (2012) On the perils of poor editing: regulation of peptide loading by HLA-DQ and H2-A molecules associated with celiac disease and type 1 diabetes. Expert Rev Mol Med 14:e15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Calderon B, Carrero JA, Unanue ER (2014) The central role of antigen presentation in islets of Langerhans in autoimmune diabetes. Curr Opin Immunol 26:32–40

    Article  CAS  PubMed  Google Scholar 

  • Cella M, Engering A, Pinet V, Pieters J, Lanzavecchia A (1997) Inflammatory stimuli induce accumulation of MHC class II complexes on dendritic cells. Nature 388:782–787

    Article  CAS  PubMed  Google Scholar 

  • Chain BM, Free P, Medd P, Swetman C, Tabor AB, Terrazzini N (2005) The expression and function of cathepsin E in dendritic cells. J Immunol 174:1791–1800

    Article  CAS  PubMed  Google Scholar 

  • Chalouni C, Banchereau J, Vogt AB, Pascual V, Davoust J (2003) Human germinal center B cells differ from naive and memory B cells by their aggregated MHC class II-rich compartments lacking HLA-DO. Int Immunol 15:457–466

    Article  CAS  PubMed  Google Scholar 

  • Chang CH, Fontes JD, Peterlin M, Flavell RA (1994) Class II transactivator (CIITA) is sufficient for the inducible expression of major histocompatibility complex class II genes. J Exp Med 180:1367–1374

    Article  CAS  PubMed  Google Scholar 

  • Chen X, Laur O, Kambayashi T, Li S, Bray RA, Weber DA, Karlsson L, Jensen PE (2002) Regulated expression of human histocompatibility leukocyte antigen (HLA)-DO during antigen-dependent and antigen-independent phases of B cell development. J Exp Med 195:1053–1062

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chen X, Reed-Loisel LM, Karlsson L, Jensen PE (2006) H2-O expression in primary dendritic cells. J Immunol 176:3548–3556

    Article  CAS  PubMed  Google Scholar 

  • Cho KJ, Walseng E, Ishido S, Roche PA (2015) Ubiquitination by March-I prevents MHC class II recycling and promotes MHC class II turnover in antigen-presenting cells. Proc Natl Acad Sci U S A 112:10449–10454

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chou CL, Sadegh-Nasseri S (2000) HLA-DM recognizes the flexible conformation of major histocompatibility complex class II. J Exp Med 192:1697–1706

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chow A, Toomre D, Garrett W, Mellman I (2002) Dendritic cell maturation triggers retrograde MHC class II transport from lysosomes to the plasma membrane. Nature 418:988–994

    Article  CAS  PubMed  Google Scholar 

  • Christen U, von Herrath MG (2005) Infections and autoimmunity—good or bad? J Immunol 174:7481–7486

    Article  CAS  PubMed  Google Scholar 

  • Clement CC, Becerra A, Yin L, Zolla V, Huang L, Merlin S, Follenzi A, Shaffer SA, Stern LJ, Santambrogio L (2016) The dendritic cell major histocompatibility complex II (MHC II) peptidome derives from a variety of processing pathways and includes peptides with a broad spectrum of HLA-DM sensitivity. J Biol Chem 291:5576–5595

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Colf LA, Bankovich AJ, Hanick NA, Bowerman NA, Jones LL, Kranz DM, Garcia KC (2007) How a single T cell receptor recognizes both self and foreign MHC. Cell 129:135–146

    Article  CAS  PubMed  Google Scholar 

  • Collado JA, Alvarez I, Ciudad MT, Espinosa G, Canals F, Pujol-Borrell R, Carrascal M, Abian J, Jaraquemada D (2013) Composition of the HLA-DR-associated human thymus peptidome. Eur J Immunol 43:2273–2282

    Article  CAS  PubMed  Google Scholar 

  • Cone RE, Sprent J, Marchalonis JJ (1972) Antigen-binding specificity of isolated cell-surface immunoglobulin from thymus cells activated to histocompatibility antigens. Proc Natl Acad Sci U S A 69:2556–2560

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cresswell P (1996) Invariant chain structure and MHC class II function. Cell 84:505–507

    Article  CAS  PubMed  Google Scholar 

  • Crotzer VL, Blum JS (2009) Autophagy and its role in MHC-mediated antigen presentation. J Immunol 182:3335–3341

    Article  CAS  PubMed  Google Scholar 

  • Cusick MF, Libbey JE, Fujinami RS (2012) Molecular mimicry as a mechanism of autoimmune disease. Clin Rev Allergy Immunol 42:102–111

    Article  CAS  PubMed  Google Scholar 

  • Daar AS, Fuggle SV, Fabre JW, Ting A, Morris PJ (1984) The detailed distribution of MHC class II antigens in normal human organs. Transplantation 38:293–298

    Article  CAS  PubMed  Google Scholar 

  • Delong T, Wiles TA, Baker RL, Bradley B, Barbour G, Reisdorph R, Armstrong M, Powell RL, Reisdorph N, Kumar N, Elso CM, DeNicola M, Bottino R, Powers AC, Harlan DM, Kent SC, Mannering SI, Haskins K (2016) Pathogenic CD4 T cells in type 1 diabetes recognize epitopes formed by peptide fusion. Science 351:711–714

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dengjel J, Schoor O, Fischer R, Reich M, Kraus M, Muller M, Kreymborg K, Altenberend F, Brandenburg J, Kalbacher H, Brock R, Driessen C, Rammensee HG, Stevanovic S (2005) Autophagy promotes MHC class II presentation of peptides from intracellular source proteins. Proc Natl Acad Sci U S A 102:7922–7927

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Denzin LK (2013) Inhibition of HLA-DM mediated MHC class II peptide loading by HLA-DO promotes self tolerance. Front Immunol 4:465

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Denzin LK, Sant'Angelo DB, Hammond C, Surman MJ, Cresswell P (1997) Negative regulation by HLA-DO of MHC class II-restricted antigen processing. Science 278:106–109

    Article  CAS  PubMed  Google Scholar 

  • Denzin LK, Fallas JL, Prendes M, Yi W (2005) Right place, right time, right peptide: DO keeps DM focused. Immunol Rev 207:279–292

    Article  CAS  PubMed  Google Scholar 

  • Denzin LK, Khan AA, Virdis F, Wilks J, Kane M, Beilinson HA, Dikiy S, Case LK, Roopenian D, Witkowski M, Chervonsky AV, Golovkina TV (2017) Neutralizing antibody responses to viral infections are linked to the non-classical MHC class II gene H2-Ob. Immunity 47:310–322 e7

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Derbinski J, Kyewski B (2010) How thymic antigen presenting cells sample the body's self-antigens. Curr Opin Immunol 22:592–600

    Article  CAS  PubMed  Google Scholar 

  • Deshaies F, Brunet A, Diallo DA, Denzin LK, Samaan A, Thibodeau J (2005) A point mutation in the groove of HLA-DO allows egress from the endoplasmic reticulum independent of HLA-DM. Proc Natl Acad Sci U S A 102:6443–6448

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Douek DC, Altmann DM (1997) HLA-DO is an intracellular class II molecule with distinctive thymic expression. Int Immunol 9:355–364

    Article  CAS  PubMed  Google Scholar 

  • Douek DC, Altmann DM (2000) T-cell apoptosis and differential human leucocyte antigen class II expression in human thymus. Immunology 99:249–256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Draheim M, Wlodarczyk MF, Crozat K, Saliou JM, Alayi TD, Tomavo S, Hassan A, Salvioni A, Demarta-Gatsi C, Sidney J, Sette A, Dalod M, Berry A, Silvie O, Blanchard N (2017) Profiling MHC II immunopeptidome of blood-stage malaria reveals that cDC1 control the functionality of parasite-specific CD4 T cells. EMBO Mol Med 9:1605–1621

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Driessen C, Bryant RA, Lennon-Dumenil AM, Villadangos JA, Bryant PW, Shi GP, Chapman HA, Ploegh HL (1999) Cathepsin S controls the trafficking and maturation of MHC class II molecules in dendritic cells. J Cell Biol 147:775–790

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Driessen C, Lennon-Dumenil AM, Ploegh HL (2001) Individual cathepsins degrade immune complexes internalized by antigen-presenting cells via Fcgamma receptors. Eur J Immunol 31:1592–1601

    Article  CAS  PubMed  Google Scholar 

  • Drutman SB, Trombetta ES (2010) Dendritic cells continue to capture and present antigens after maturation in vivo. J Immunol 185:2140–2146

    Article  CAS  PubMed  Google Scholar 

  • Elliott EA, Drake JR, Amigorena S, Elsemore J, Webster P, Mellman I, Flavell RA (1994) The invariant chain is required for intracellular transport and function of major histocompatibility complex class II molecules. J Exp Med 179:681–694

    Article  CAS  PubMed  Google Scholar 

  • Fallang LE, Roh S, Holm A, Bergseng E, Yoon T, Fleckenstein B, Bandyopadhyay A, Mellins ED, Sollid LM (2008) Complexes of two cohorts of CLIP peptides and HLA-DQ2 of the autoimmune DR3-DQ2 haplotype are poor substrates for HLA-DM. J Immunol 181:5451–5461

    Article  CAS  PubMed  Google Scholar 

  • Fallas JL, Tobin HM, Lou O, Guo D, Sant'Angelo DB, Denzin LK (2004) Ectopic expression of HLA-DO in mouse dendritic cells diminishes MHC class II antigen presentation. J Immunol 173:1549–1560

    Article  CAS  PubMed  Google Scholar 

  • Fallas JL, Yi W, Draghi NA, O'Rourke HM, Denzin LK (2007) Expression patterns of H2-O in mouse B cells and dendritic cells correlate with cell function. J Immunol 178:1488–1497

    Article  CAS  PubMed  Google Scholar 

  • Ferrante A, Gorski J (2010) Cutting edge: HLA-DM-mediated peptide exchange functions normally on MHC class II-peptide complexes that have been weakened by elimination of a conserved hydrogen bond. J Immunol 184:1153–1158

    Article  CAS  PubMed  Google Scholar 

  • Ferrante A, Gorski J (2012) A peptide/MHCII conformer generated in the presence of exchange peptide is substrate for HLA-DM editing. Sci Rep 2:386

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ferrante A, Templeton M, Hoffman M, Castellini MJ (2015) The thermodynamic mechanism of peptide-MHC class II complex formation is a determinant of susceptibility to HLA-DM. J Immunol 195:1251–1261

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fiebiger E, Meraner P, Weber E, Fang IF, Stingl G, Ploegh H, Maurer D (2001) Cytokines regulate proteolysis in major histocompatibility complex class II-dependent antigen presentation by dendritic cells. J Exp Med 193:881–892

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fife BT, Pauken KE, Eagar TN, Obu T, Wu J, Tang Q, Azuma M, Krummel MF, Bluestone JA (2009) Interactions between PD-1 and PD-L1 promote tolerance by blocking the TCR-induced stop signal. Nat Immunol 10:1185–1192

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Flannagan RS, Jaumouille V, Grinstein S (2012) The cell biology of phagocytosis. Annu Rev Pathol 7:61–98

    Article  CAS  PubMed  Google Scholar 

  • Fletcher AL, Malhotra D, Turley SJ (2011) Lymph node stroma broaden the peripheral tolerance paradigm. Trends Immunol 32:12–18

    Article  CAS  PubMed  Google Scholar 

  • Fortier MH, Caron E, Hardy MP, Voisin G, Lemieux S, Perreault C, Thibault P (2008) The MHC class I peptide repertoire is molded by the transcriptome. J Exp Med 205:595–610

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fugmann T, Sofron A, Ritz D, Bootz F, Neri D (2017) The MHC class II immunopeptidome of lymph nodes in health and in chemically induced colitis. J Immunol 198:1357–1364

    Article  CAS  PubMed  Google Scholar 

  • Fujinami RS (2001) Viruses and autoimmune disease—two sides of the same coin? Trends Microbiol 9:377–381

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fujinami RS, Oldstone MB (1985) Amino acid homology between the encephalitogenic site of myelin basic protein and virus: mechanism for autoimmunity. Science 230:1043–1045

    Article  CAS  PubMed  Google Scholar 

  • Fujinami RS, von Herrath MG, Christen U, Whitton JL (2006) Molecular mimicry, bystander activation, or viral persistence: infections and autoimmune disease. Clin Microbiol Rev 19:80–94

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fung-Leung WP, Surh CD, Liljedahl M, Pang J, Leturcq D, Peterson PA, Webb SR, Karlsson L (1996) Antigen presentation and T cell development in H2-M-deficient mice. Science 271:1278–1281

    Article  CAS  PubMed  Google Scholar 

  • Gambineri E, Torgerson TR, Ochs HD (2003) Immune dysregulation, polyendocrinopathy, enteropathy, and X-linked inheritance (IPEX), a syndrome of systemic autoimmunity caused by mutations of FOXP3, a critical regulator of T-cell homeostasis. Curr Opin Rheumatol 15:430–435

    Article  CAS  PubMed  Google Scholar 

  • Garrett WS, Chen LM, Kroschewski R, Ebersold M, Turley S, Trombetta S, Galan JE, Mellman I (2000) Developmental control of endocytosis in dendritic cells by Cdc42. Cell 102:325–334

    Article  CAS  PubMed  Google Scholar 

  • Glazier KS, Hake SB, Tobin HM, Chadburn A, Schattner EJ, Denzin LK (2002) Germinal center B cells regulate their capability to present antigen by modulation of HLA-DO. J Exp Med 195:1063–1069

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gommeaux J, Gregoire C, Nguessan P, Richelme M, Malissen M, Guerder S, Malissen B, Carrier A (2009) Thymus-specific serine protease regulates positive selection of a subset of CD4+ thymocytes. Eur J Immunol 39:956–964

    Article  CAS  PubMed  Google Scholar 

  • Gondre-Lewis TA, Moquin AE, Drake JR (2001) Prolonged antigen persistence within nonterminal late endocytic compartments of antigen-specific B lymphocytes. J Immunol 166:6657–6664

    Article  CAS  PubMed  Google Scholar 

  • Gren ST, Rasmussen TB, Janciauskiene S, Hakansson K, Gerwien JG, Grip O (2015) A single-cell gene-expression profile reveals inter-cellular heterogeneity within human monocyte subsets. PLoS One 10:e0144351

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Griffin JP, Chu R, Harding CV (1997) Early endosomes and a late endocytic compartment generate different peptide-class II MHC complexes via distinct processing mechanisms. J Immunol 158:1523–1532

    CAS  PubMed  Google Scholar 

  • Gubser C, Schmaler M, Rossi SW, Palmer E (2016) Monoclonal regulatory T cells provide insights into T cell suppression. Sci Rep 6:25758

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Guce AI, Mortimer SE, Yoon T, Painter CA, Jiang W, Mellins ED, Stern LJ (2013) HLA-DO acts as a substrate mimic to inhibit HLA-DM by a competitive mechanism. Nat Struct Mol Biol 20:90–98

    Article  CAS  PubMed  Google Scholar 

  • Guilliams M, Bruhns P, Saeys Y, Hammad H, Lambrecht BN (2014) The function of Fcgamma receptors in dendritic cells and macrophages. Nat Rev Immunol 14:94–108

    Article  CAS  PubMed  Google Scholar 

  • Harkiolaki M, Holmes SL, Svendsen P, Gregersen JW, Jensen LT, McMahon R, Friese MA, van Boxel G, Etzensperger R, Tzartos JS, Kranc K, Sainsbury S, Harlos K, Mellins ED, Palace J, Esiri MM, van der Merwe PA, Jones EY, Fugger L (2009) T cell-mediated autoimmune disease due to low-affinity crossreactivity to common microbial peptides. Immunity 30:348–357

    Article  CAS  PubMed  Google Scholar 

  • Hemmer B, Fleckenstein BT, Vergelli M, Jung G, McFarland H, Martin R, Wiesmuller KH (1997) Identification of high potency microbial and self ligands for a human autoreactive class II-restricted T cell clone. J Exp Med 185:1651–1659

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hershberg RM, Framson PE, Cho DH, Lee LY, Kovats S, Beitz J, Blum JS, Nepom GT (1997) Intestinal epithelial cells use two distinct pathways for HLA class II antigen processing. J Clin Invest 100:204–215

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Honey K, Duff M, Beers C, Brissette WH, Elliott EA, Peters C, Maric M, Cresswell P, Rudensky A (2001) Cathepsin S regulates the expression of cathepsin L and the turnover of gamma-interferon-inducible lysosomal thiol reductase in B lymphocytes. J Biol Chem 276:22573–22578

    Article  CAS  PubMed  Google Scholar 

  • Honey K, Nakagawa T, Peters C, Rudensky A (2002) Cathepsin L regulates CD4+ T cell selection independently of its effect on invariant chain: a role in the generation of positively selecting peptide ligands. J Exp Med 195:1349–1358

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hornell TM, Burster T, Jahnsen FL, Pashine A, Ochoa MT, Harding JJ, Macaubas C, Lee AW, Modlin RL, Mellins ED (2006) Human dendritic cell expression of HLA-DO is subset specific and regulated by maturation. J Immunol 176:3536–3547

    Article  CAS  PubMed  Google Scholar 

  • Hou T, Macmillan H, Chen Z, Keech CL, Jin X, Sidney J, Strohman M, Yoon T, Mellins ED (2011) An insertion mutant in DQA1*0501 restores susceptibility to HLA-DM: implications for disease associations. J Immunol 187:2442–2452

    Article  CAS  PubMed  Google Scholar 

  • Hsieh CS, deRoos P, Honey K, Beers C, Rudensky AY (2002) A role for cathepsin L and cathepsin S in peptide generation for MHC class II presentation. J Immunol 168:2618–2625

    Article  CAS  PubMed  Google Scholar 

  • Hsieh CS, Lee HM, Lio CW (2012) Selection of regulatory T cells in the thymus. Nat Rev Immunol 12:157–167

    Article  CAS  PubMed  Google Scholar 

  • Huseby ES, White J, Crawford F, Vass T, Becker D, Pinilla C, Marrack P, Kappler JW (2005) How the T cell repertoire becomes peptide and MHC specific. Cell 122:247–260

    Article  CAS  PubMed  Google Scholar 

  • Hwang I, Huang JF, Kishimoto H, Brunmark A, Peterson PA, Jackson MR, Surh CD, Cai Z, Sprent J (2000) T cells can use either T cell receptor or CD28 receptors to absorb and internalize cell surface molecules derived from antigen-presenting cells. J Exp Med 191:1137–1148

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ireland JM, Unanue ER (2011) Autophagy in antigen-presenting cells results in presentation of citrullinated peptides to CD4 T cells. J Exp Med 208:2625–2632

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jagannath C, Lindsey DR, Dhandayuthapani S, Xu Y, Hunter RL Jr, Eissa NT (2009) Autophagy enhances the efficacy of BCG vaccine by increasing peptide presentation in mouse dendritic cells. Nat Med 15:267–276

    Article  CAS  PubMed  Google Scholar 

  • Jiang W, Swiggard WJ, Heufler C, Peng M, Mirza A, Steinman RM, Nussenzweig MC (1995) The receptor DEC-205 expressed by dendritic cells and thymic epithelial cells is involved in antigen processing. Nature 375:151–155

    Article  CAS  PubMed  Google Scholar 

  • Jiang W, Strohman MJ, Somasundaram S, Ayyangar S, Hou T, Wang N, Mellins ED (2015) pH-susceptibility of HLA-DO tunes DO/DM ratios to regulate HLA-DM catalytic activity. Sci Rep 5:17333

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jin N, Wang Y, Crawford F, White J, Marrack P, Dai S, Kappler JW (2015) N-terminal additions to the WE14 peptide of chromogranin A create strong autoantigen agonists in type 1 diabetes. Proc Natl Acad Sci U S A 112:13318–13323

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Joly E, Hudrisier D (2003) What is trogocytosis and what is its purpose? Nat Immunol 4:815

    Article  CAS  PubMed  Google Scholar 

  • Kakehashi H, Nishioku T, Tsukuba T, Kadowaki T, Nakamura S, Yamamoto K (2007) Differential regulation of the nature and functions of dendritic cells and macrophages by cathepsin E. J Immunol 179:5728–5737

    Article  CAS  PubMed  Google Scholar 

  • Kanamori M, Nakatsukasa H, Okada M, Lu Q, Yoshimura A (2016) Induced regulatory T cells: their development, stability, and applications. Trends Immunol 37:803–811

    Article  CAS  PubMed  Google Scholar 

  • Karlsson L, Surh CD, Sprent J, Peterson PA (1991) A novel class II MHC molecule with unusual tissue distribution. Nature 351:485–488

    Article  CAS  PubMed  Google Scholar 

  • Kasai M, Kominami E, Mizuochi T (1998) The antigen presentation pathway in medullary thymic epithelial cells, but not that in cortical thymic epithelial cells, conforms to the endocytic pathway. Eur J Immunol 28:1867–1876

    Article  CAS  PubMed  Google Scholar 

  • Kasai M, Tanida I, Ueno T, Kominami E, Seki S, Ikeda T, Mizuochi T (2009) Autophagic compartments gain access to the MHC class II compartments in thymic epithelium. J Immunol 183:7278–7285

    Article  CAS  PubMed  Google Scholar 

  • Kaushik S, Cuervo AM (2018) The coming of age of chaperone-mediated autophagy. Nat Rev Mol Cell Biol 19:365–381

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kim A, Hartman IZ, Poore B, Boronina T, Cole RN, Song N, Ciudad MT, Caspi RR, Jaraquemada D, Sadegh-Nasseri S (2014) Divergent paths for the selection of immunodominant epitopes from distinct antigenic sources. Nat Commun 5:5369

    Article  CAS  PubMed  Google Scholar 

  • Klein L, Jovanovic K (2011) Regulatory T cell lineage commitment in the thymus. Semin Immunol 23:401–409

    Article  CAS  PubMed  Google Scholar 

  • Klein L, Hinterberger M, Wirnsberger G, Kyewski B (2009) Antigen presentation in the thymus for positive selection and central tolerance induction. Nat Rev Immunol 9:833–844

    Article  CAS  PubMed  Google Scholar 

  • Klein L, Kyewski B, Allen PM, Hogquist KA (2014) Positive and negative selection of the T cell repertoire: what thymocytes see (and don't see). Nat Rev Immunol 14:377–391

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Klionsky DJ (2007) Autophagy: from phenomenology to molecular understanding in less than a decade. Nat Rev Mol Cell Biol 8:931–937

    Article  CAS  PubMed  Google Scholar 

  • Kreisel D, Richardson SB, Li W, Lin X, Kornfeld CG, Sugimoto S, Hsieh CS, Gelman AE, Krupnick AS (2010) Cutting edge: MHC class II expression by pulmonary nonhematopoietic cells plays a critical role in controlling local inflammatory responses. J Immunol 185:3809–3813

    Article  CAS  PubMed  Google Scholar 

  • Kremer AN, van der Meijden ED, Honders MW, Goeman JJ, Wiertz EJ, Falkenburg JH, Griffioen M (2012) Endogenous HLA class II epitopes that are immunogenic in vivo show distinct behavior toward HLA-DM and its natural inhibitor HLA-DO. Blood 120:3246–3255

    Article  CAS  PubMed  Google Scholar 

  • Kroger CJ, Spidale NA, Wang B, Tisch R (2017) Thymic dendritic cell subsets display distinct efficiencies and mechanisms of intercellular MHC transfer. J Immunol 198:249–256

    Article  CAS  PubMed  Google Scholar 

  • Kropshofer H, Vogt AB, Moldenhauer G, Hammer J, Blum JS, Hammerling GJ (1996) Editing of the HLA-DR-peptide repertoire by HLA-DM. EMBO J 15:6144–6154

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kropshofer H, Vogt AB, Thery C, Armandola EA, Li BC, Moldenhauer G, Amigorena S, Hammerling GJ (1998) A role for HLA-DO as a co-chaperone of HLA-DM in peptide loading of MHC class II molecules. EMBO J 17:2971–2981

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lanzavecchia A (1985) Antigen-specific interaction between T and B cells. Nature 314:537–539

    Article  CAS  PubMed  Google Scholar 

  • Lautwein A, Burster T, Lennon-Dumenil AM, Overkleeft HS, Weber E, Kalbacher H, Driessen C (2002) Inflammatory stimuli recruit cathepsin activity to late endosomal compartments in human dendritic cells. Eur J Immunol 32:3348–3357

    Article  CAS  PubMed  Google Scholar 

  • Lazarski CA, Chaves FA, Jenks SA, Wu S, Richards KA, Weaver JM, Sant AJ (2005) The kinetic stability of MHC class II:peptide complexes is a key parameter that dictates immunodominance. Immunity 23:29–40

    Article  CAS  PubMed  Google Scholar 

  • Lee HK, Mattei LM, Steinberg BE, Alberts P, Lee YH, Chervonsky A, Mizushima N, Grinstein S, Iwasaki A (2010) In vivo requirement for Atg5 in antigen presentation by dendritic cells. Immunity 32:227–239

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee HM, Bautista JL, Scott-Browne J, Mohan JF, Hsieh CS (2012) A broad range of self-reactivity drives thymic regulatory T cell selection to limit responses to self. Immunity 37:475–486

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee J, Tam H, Adler L, Ilstad-Minnihan A, Macaubas C, Mellins ED (2017) The MHC class II antigen presentation pathway in human monocytes differs by subset and is regulated by cytokines. PLoS One 12:e0183594

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Levine B, Klionsky DJ (2004) Development by self-digestion: molecular mechanisms and biological functions of autophagy. Dev Cell 6:463–477

    Article  CAS  PubMed  Google Scholar 

  • Li P, Wang N, Zhou D, Yee CS, Chang CH, Brutkiewicz RR, Blum JS (2005) Disruption of MHC class II-restricted antigen presentation by vaccinia virus. J Immunol 175:6481–6488

    Article  CAS  PubMed  Google Scholar 

  • Liang Z, Zhang L, Su H, Luan R, Na N, Sun L, Zhao Y, Zhang X, Zhang Q, Li J, Zhang L, Zhao Y (2018) MTOR signaling is essential for the development of thymic epithelial cells and the induction of central immune tolerance. Autophagy 14:505–517

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Liljedahl M, Kuwana T, Fung-Leung WP, Jackson MR, Peterson PA, Karlsson L (1996) HLA-DO is a lysosomal resident which requires association with HLA-DM for efficient intracellular transport. EMBO J 15:4817–4824

    Article  PubMed  PubMed Central  Google Scholar 

  • Liljedahl M, Winqvist O, Surh CD, Wong P, Ngo K, Teyton L, Peterson PA, Brunmark A, Rudensky AY, Fung-Leung WP, Karlsson L (1998) Altered antigen presentation in mice lacking H2-O. Immunity 8:233–243

    Article  CAS  PubMed  Google Scholar 

  • Lim JP, Gleeson PA (2011) Macropinocytosis: an endocytic pathway for internalising large gulps. Immunol Cell Biol 89:836–843

    Article  CAS  PubMed  Google Scholar 

  • Lin XP, Almqvist N, Telemo E (2005) Human small intestinal epithelial cells constitutively express the key elements for antigen processing and the production of exosomes. Blood Cells Mol Dis 35:122–128

    Article  CAS  PubMed  Google Scholar 

  • Lindner R, Unanue ER (1996) Distinct antigen MHC class II complexes generated by separate processing pathways. EMBO J 15:6910–6920

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Linehan SA, Martinez-Pomares L, Stahl PD, Gordon S (1999) Mannose receptor and its putative ligands in normal murine lymphoid and nonlymphoid organs: in situ expression of mannose receptor by selected macrophages, endothelial cells, perivascular microglia, and mesangial cells, but not dendritic cells. J Exp Med 189:1961–1972

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lotteau V, Teyton L, Peleraux A, Nilsson T, Karlsson L, Schmid SL, Quaranta V, Peterson PA (1990) Intracellular transport of class II MHC molecules directed by invariant chain. Nature 348:600–605

    Article  CAS  PubMed  Google Scholar 

  • Lovitch SB, Petzold SJ, Unanue ER (2003) Cutting edge: H-2DM is responsible for the large differences in presentation among peptides selected by I-Ak during antigen processing. J Immunol 171:2183–2186

    Article  CAS  PubMed  Google Scholar 

  • Malhotra S, Kovats S, Zhang W, Coggeshall KM (2009) B cell antigen receptor endocytosis and antigen presentation to T cells require Vav and dynamin. J Biol Chem 284:24088–24097

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Manoury B, Hewitt EW, Morrice N, Dando PM, Barrett AJ, Watts C (1998) An asparaginyl endopeptidase processes a microbial antigen for class II MHC presentation. Nature 396:695–699

    Article  CAS  PubMed  Google Scholar 

  • Manoury B, Mazzeo D, Fugger L, Viner N, Ponsford M, Streeter H, Mazza G, Wraith DC, Watts C (2002) Destructive processing by asparagine endopeptidase limits presentation of a dominant T cell epitope in MBP. Nat Immunol 3:169–174

    Article  CAS  PubMed  Google Scholar 

  • Martin WD, Hicks GG, Mendiratta SK, Leva HI, Ruley HE, Van Kaer L (1996) H2-M mutant mice are defective in the peptide loading of class II molecules, antigen presentation, and T cell repertoire selection. Cell 84:543–550

    Article  CAS  PubMed  Google Scholar 

  • Martinez J, Malireddi RK, Lu Q, Cunha LD, Pelletier S, Gingras S, Orchard R, Guan JL, Tan H, Peng J, Kanneganti TD, Virgin HW, Green DR (2015) Molecular characterization of LC3-associated phagocytosis reveals distinct roles for Rubicon, NOX2 and autophagy proteins. Nat Cell Biol 17:893–906

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Masternak K, Muhlethaler-Mottet A, Villard J, Zufferey M, Steimle V, Reith W (2000) CIITA is a transcriptional coactivator that is recruited to MHC class II promoters by multiple synergistic interactions with an enhanceosome complex. Genes Dev 14:1156–1166

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mathis D, Benoist C (2009) Aire. Annu Rev Immunol 27:287–312

    Article  CAS  PubMed  Google Scholar 

  • McDouall RM, Yacoub M, Rose ML (1996) Isolation, culture, and characterisation of MHC class II-positive microvascular endothelial cells from the human heart. Microvasc Res 51:137–152

    Article  CAS  PubMed  Google Scholar 

  • Millet V, Naquet P, Guinamard RR (2008) Intercellular MHC transfer between thymic epithelial and dendritic cells. Eur J Immunol 38:1257–1263

    Article  CAS  PubMed  Google Scholar 

  • Miyazaki T, Wolf P, Tourne S, Waltzinger C, Dierich A, Barois N, Ploegh H, Benoist C, Mathis D (1996) Mice lacking H2-M complexes, enigmatic elements of the MHC class II peptide-loading pathway. Cell 84:531–541

    Article  CAS  PubMed  Google Scholar 

  • Mohan JF, Unanue ER (2012) Unconventional recognition of peptides by T cells and the implications for autoimmunity. Nat Rev Immunol 12:721–728

    Article  CAS  PubMed  Google Scholar 

  • Mohan JF, Petzold SJ, Unanue ER (2011) Register shifting of an insulin peptide-MHC complex allows diabetogenic T cells to escape thymic deletion. J Exp Med 208:2375–2383

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mommen GP, Marino F, Meiring HD, Poelen MC, van Gaans-van den Brink JA, Mohammed S, Heck AJ, van Els CA (2016) Sampling from the proteome to the human leukocyte antigen-DR (HLA-DR) ligandome proceeds via high specificity. Mol Cell Proteomics 15:1412–1423

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Moran AE, Holzapfel KL, Xing Y, Cunningham NR, Maltzman JS, Punt J, Hogquist KA (2011) T cell receptor signal strength in Treg and iNKT cell development demonstrated by a novel fluorescent reporter mouse. J Exp Med 208:1279–1289

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Moss CX, Villadangos JA, Watts C (2005) Destructive potential of the aspartyl protease cathepsin D in MHC class II-restricted antigen processing. Eur J Immunol 35:3442–3451

    Article  CAS  PubMed  Google Scholar 

  • Mueller DL (2010) Mechanisms maintaining peripheral tolerance. Nat Immunol 11:21–27

    Article  CAS  PubMed  Google Scholar 

  • Muixi L, Contreras V, Collado JA, Alexandre Y, Ballingall K, Bonneau M, Jaraquemada D, Schwartz-Cornil I (2012) Unraveling features of the natural MHC class II peptidome of skin-migrated dendritic cells. Int Immunol 24:59–69

    Article  CAS  PubMed  Google Scholar 

  • Muzaki AR, Tetlak P, Sheng J, Loh SC, Setiagani YA, Poidinger M, Zolezzi F, Karjalainen K, Ruedl C (2016) Intestinal CD103(+)CD11b(−) dendritic cells restrain colitis via IFN-gamma-induced anti-inflammatory response in epithelial cells. Mucosal Immunol 9:336–351

    Article  CAS  PubMed  Google Scholar 

  • Myers JT, Tsang AW, Swanson JA (2003) Localized reactive oxygen and nitrogen intermediates inhibit escape of Listeria monocytogenes from vacuoles in activated macrophages. J Immunol 171:5447–5453

    Article  CAS  PubMed  Google Scholar 

  • Nakagawa T, Roth W, Wong P, Nelson A, Farr A, Deussing J, Villadangos JA, Ploegh H, Peters C, Rudensky AY (1998) Cathepsin L: critical role in Ii degradation and CD4 T cell selection in the thymus. Science 280:450–453

    Article  CAS  PubMed  Google Scholar 

  • Nakagawa TY, Brissette WH, Lira PD, Griffiths RJ, Petrushova N, Stock J, McNeish JD, Eastman SE, Howard ED, Clarke SR, Rosloniec EF, Elliott EA, Rudensky AY (1999) Impaired invariant chain degradation and antigen presentation and diminished collagen-induced arthritis in cathepsin S null mice. Immunity 10:207–217

    Article  CAS  PubMed  Google Scholar 

  • Nakayama M (2014) Antigen presentation by MHC-dressed cells. Front Immunol 5:672

    PubMed  Google Scholar 

  • Nakayama M, Takeda K, Kawano M, Takai T, Ishii N, Ogasawara K (2011) Natural killer (NK)-dendritic cell interactions generate MHC class II-dressed NK cells that regulate CD4+ T cells. Proc Natl Acad Sci U S A 108:18360–18365

    Article  PubMed  PubMed Central  Google Scholar 

  • Narayan K, Su KW, Chou CL, Khoruzhenko S, Sadegh-Nasseri S (2009) HLA-DM mediates peptide exchange by interacting transiently and repeatedly with HLA-DR1. Mol Immunol 46:3157–3162

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nedjic J, Aichinger M, Emmerich J, Mizushima N, Klein L (2008) Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance. Nature 455:396–400

    Article  CAS  PubMed  Google Scholar 

  • Nguyen H, James EA (2016) Immune recognition of citrullinated epitopes. Immunology 149:131–138

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nguyen TB, Jayaraman P, Bergseng E, Madhusudhan MS, Kim CY, Sollid LM (2017) Unraveling the structural basis for the unusually rich association of human leukocyte antigen DQ2.5 with class-II-associated invariant chain peptides. J Biol Chem 292:9218–9228

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nijman HW, Kleijmeer MJ, Ossevoort MA, Oorschot VM, Vierboom MP, van de Keur M, Kenemans P, Kast WM, Geuze HJ, Melief CJ (1995) Antigen capture and major histocompatibility class II compartments of freshly isolated and cultured human blood dendritic cells. J Exp Med 182:163–174

    Article  CAS  PubMed  Google Scholar 

  • Nishimura H, Nose M, Hiai H, Minato N, Honjo T (1999) Development of lupus-like autoimmune diseases by disruption of the PD-1 gene encoding an ITIM motif-carrying immunoreceptor. Immunity 11:141–151

    Article  CAS  PubMed  Google Scholar 

  • Olsson N, Schultz LM, Zhang L, Khodadoust MS, Narayan R, Czerwinski DK, Levy R, Elias JE (2018) T-cell immunopeptidomes reveal cell subtype surface markers derived from intracellular proteins. Proteomics 18:e1700410

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Onishi Y, Fehervari Z, Yamaguchi T, Sakaguchi S (2008) Foxp3+ natural regulatory T cells preferentially form aggregates on dendritic cells in vitro and actively inhibit their maturation. Proc Natl Acad Sci U S A 105:10113–10118

    Article  PubMed  PubMed Central  Google Scholar 

  • Painter CA, Negroni MP, Kellersberger KA, Zavala-Ruiz Z, Evans JE, Stern LJ (2011) Conformational lability in the class II MHC 310 helix and adjacent extended strand dictate HLA-DM susceptibility and peptide exchange. Proc Natl Acad Sci U S A 108:19329–19334

    Article  PubMed  PubMed Central  Google Scholar 

  • Paludan C, Schmid D, Landthaler M, Vockerodt M, Kube D, Tuschl T, Munz C (2005) Endogenous MHC class II processing of a viral nuclear antigen after autophagy. Science 307:593–596

    Article  CAS  PubMed  Google Scholar 

  • Pathak SS, Blum JS (2000) Endocytic recycling is required for the presentation of an exogenous peptide via MHC class II molecules. Traffic 1:561–569

    Article  CAS  PubMed  Google Scholar 

  • Pathak SS, Lich JD, Blum JS (2001) Cutting edge: editing of recycling class II:peptide complexes by HLA-DM. J Immunol 167:632–635

    Article  CAS  PubMed  Google Scholar 

  • Perraudeau M, Taylor PR, Stauss HJ, Lindstedt R, Bygrave AE, Pappin DJ, Ellmerich S, Whitten A, Rahman D, Canas B, Walport MJ, Botto M, Altmann DM (2000) Altered major histocompatibility complex class II peptide loading in H2-O-deficient mice. Eur J Immunol 30:2871–2880

    Article  CAS  PubMed  Google Scholar 

  • Pierre P, Mellman I (1998) Developmental regulation of invariant chain proteolysis controls MHC class II trafficking in mouse dendritic cells. Cell 93:1135–1145

    Article  CAS  PubMed  Google Scholar 

  • Pierre P, Turley SJ, Gatti E, Hull M, Meltzer J, Mirza A, Inaba K, Steinman RM, Mellman I (1997) Developmental regulation of MHC class II transport in mouse dendritic cells. Nature 388:787–792

    Article  CAS  PubMed  Google Scholar 

  • Pieters J, Bakke O, Dobberstein B (1993) The MHC class II-associated invariant chain contains two endosomal targeting signals within its cytoplasmic tail. J Cell Sci 106(Pt 3):831–846

    CAS  PubMed  Google Scholar 

  • Pires D, Marques J, Pombo JP, Carmo N, Bettencourt P, Neyrolles O, Lugo-Villarino G, Anes E (2016) Role of cathepsins in Mycobacterium tuberculosis survival in human macrophages. Sci Rep 6:32247

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Platt CD, Ma JK, Chalouni C, Ebersold M, Bou-Reslan H, Carano RA, Mellman I, Delamarre L (2010) Mature dendritic cells use endocytic receptors to capture and present antigens. Proc Natl Acad Sci U S A 107:4287–4292

    Article  PubMed  PubMed Central  Google Scholar 

  • Pluger EB, Boes M, Alfonso C, Schroter CJ, Kalbacher H, Ploegh HL, Driessen C (2002) Specific role for cathepsin S in the generation of antigenic peptides in vivo. Eur J Immunol 32:467–476

    Article  CAS  PubMed  Google Scholar 

  • Pober JS, Collins T, Gimbrone MA Jr, Cotran RS, Gitlin JD, Fiers W, Clayberger C, Krensky AM, Burakoff SJ, Reiss CS (1983) Lymphocytes recognize human vascular endothelial and dermal fibroblast Ia antigens induced by recombinant immune interferon. Nature 305:726–729

    Article  CAS  PubMed  Google Scholar 

  • Pos W, Sethi DK, Call MJ, Schulze MS, Anders AK, Pyrdol J, Wucherpfennig KW (2012) Crystal structure of the HLA-DM-HLA-DR1 complex defines mechanisms for rapid peptide selection. Cell 151:1557–1568

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pos W, Sethi DK, Wucherpfennig KW (2013) Mechanisms of peptide repertoire selection by HLA-DM. Trends Immunol 34:495–501

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Raddrizzani L, Bono E, Vogt AB, Kropshofer H, Gallazzi F, Sturniolo T, Hammerling GJ, Sinigaglia F, Hammer J (1999) Identification of destabilizing residues in HLA class II-selected bacteriophage display libraries edited by HLA-DM. Eur J Immunol 29:660–668

    Article  CAS  PubMed  Google Scholar 

  • Ramsdell F, Ziegler SF (2014) FOXP3 and scurfy: how it all began. Nat Rev Immunol 14:343–349

    Article  CAS  PubMed  Google Scholar 

  • Ranella A, Vassiliadis S, Mastora C, Valentina M, Dionyssopoulou E, Athanassakis I (2005) Constitutive intracellular expression of human leukocyte antigen (HLA)-DO and HLA-DR but not HLA-DM in trophoblast cells. Hum Immunol 66:43–55

    Article  CAS  PubMed  Google Scholar 

  • Rausch MP, Irvine KR, Antony PA, Restifo NP, Cresswell P, Hastings KT (2010) GILT accelerates autoimmunity to the melanoma antigen tyrosinase-related protein 1. J Immunol 185:2828–2835

    Article  CAS  PubMed  Google Scholar 

  • Reid PA, Watts C (1990) Cycling of cell-surface MHC glycoproteins through primaquine-sensitive intracellular compartments. Nature 346:655–657

    Article  CAS  PubMed  Google Scholar 

  • Reilly JJJ, Chen P, Sailor LZ, Mason RW, Chapman HAJ (1990) Uptake of extracellular enzyme by a novel pathway is a major determinant of cathepsin L levels in human macrophages. J Clin Invest 86:176–183

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Reith W, LeibundGut-Landmann S, Waldburger JM (2005) Regulation of MHC class II gene expression by the class II transactivator. Nat Rev Immunol 5:793–806

    Article  CAS  PubMed  Google Scholar 

  • Riese RJ, Wolf PR, Bromme D, Natkin LR, Villadangos JA, Ploegh HL, Chapman HA (1996) Essential role for cathepsin S in MHC class II-associated invariant chain processing and peptide loading. Immunity 4:357–366

    Article  CAS  PubMed  Google Scholar 

  • Riese RJ, Mitchell RN, Villadangos JA, Shi GP, Palmer JT, Karp ER, De Sanctis GT, Ploegh HL, Chapman HA (1998) Cathepsin S activity regulates antigen presentation and immunity. J Clin Invest 101:2351–2363

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Roche PA, Cresswell P (1990) Invariant chain association with HLA-DR molecules inhibits immunogenic peptide binding. Nature 345:615–618

    Article  CAS  PubMed  Google Scholar 

  • Roche PA, Furuta K (2015) The ins and outs of MHC class II-mediated antigen processing and presentation. Nat Rev Immunol 15:203–216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rock KL, Benacerraf B, Abbas AK (1984) Antigen presentation by hapten-specific B lymphocytes. I. Role of surface immunoglobulin receptors. J Exp Med 160:1102–1113

    Article  CAS  PubMed  Google Scholar 

  • Rouse RV, Parham P, Grumet FC, Weissman IL (1982) Expression of HLA antigens by human thymic epithelial cells. Hum Immunol 5:21–34

    Article  CAS  PubMed  Google Scholar 

  • Sakaguchi S, Sakaguchi N, Asano M, Itoh M, Toda M (1995) Immunologic self-tolerance maintained by activated T cells expressing IL-2 receptor alpha-chains (CD25). Breakdown of a single mechanism of self-tolerance causes various autoimmune diseases. J Immunol 155:1151–1164

    CAS  PubMed  Google Scholar 

  • Sallusto F, Lanzavecchia A (1994) Efficient presentation of soluble antigen by cultured human dendritic cells is maintained by granulocyte/macrophage colony-stimulating factor plus interleukin 4 and downregulated by tumor necrosis factor alpha. J Exp Med 179:1109–1118

    Article  CAS  PubMed  Google Scholar 

  • Sallusto F, Cella M, Danieli C, Lanzavecchia A (1995) Dendritic cells use macropinocytosis and the mannose receptor to concentrate macromolecules in the major histocompatibility complex class II compartment: downregulation by cytokines and bacterial products. J Exp Med 182:389–400

    Article  CAS  PubMed  Google Scholar 

  • Sant AJ, Chaves FA, Jenks SA, Richards KA, Menges P, Weaver JM, Lazarski CA (2005) The relationship between immunodominance, DM editing, and the kinetic stability of MHC class II:peptide complexes. Immunol Rev 207:261–278

    Article  CAS  PubMed  Google Scholar 

  • Sant AJ, Chaves FA, Leddon SA, Tung J (2013) The control of the specificity of CD4 T cell responses: thresholds, breakpoints, and ceilings. Front Immunol 4:340

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Santin AD, Hermonat PL, Ravaggi A, Chiriva-Internati M, Cannon MJ, Hiserodt JC, Pecorelli S, Parham GP (1999) Expression of surface antigens during the differentiation of human dendritic cells vs macrophages from blood monocytes in vitro. Immunobiology 200:187–204

    Article  CAS  PubMed  Google Scholar 

  • Savina A, Amigorena S (2007) Phagocytosis and antigen presentation in dendritic cells. Immunol Rev 219:143–156

    Article  CAS  PubMed  Google Scholar 

  • Savina A, Peres A, Cebrian I, Carmo N, Moita C, Hacohen N, Moita LF, Amigorena S (2009) The small GTPase Rac2 controls phagosomal alkalinization and antigen crosspresentation selectively in CD8(+) dendritic cells. Immunity 30:544–555

    Article  CAS  PubMed  Google Scholar 

  • Schellens IM, Hoof I, Meiring HD, Spijkers SN, Poelen MC, van Gaans-van den Brink JA, van der Poel K, Costa AI, van Els CA, van Baarle D, Kesmir C (2015) Comprehensive analysis of the naturally processed peptide repertoire: differences between HLA-A and B in the immunopeptidome. PLoS One 10:e0136417

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schmid D, Pypaert M, Munz C (2007) Antigen-loading compartments for major histocompatibility complex class II molecules continuously receive input from autophagosomes. Immunity 26:79–92

    Article  CAS  PubMed  Google Scholar 

  • Scott H, Solheim BG, Brandtzaeg P, Thorsby E (1980) HLA-DR-like antigens in the epithelium of the human small intestine. Scand J Immunol 12:77–82

    Article  CAS  PubMed  Google Scholar 

  • Sealy L, Mota F, Rayment N, Tatnell P, Kay J, Chain B (1996) Regulation of cathepsin E expression during human B cell differentiation in vitro. Eur J Immunol 26:1838–1843

    Article  CAS  PubMed  Google Scholar 

  • Senior RM, Campbell EJ (1984) Cathepsin G in human mononuclear phagocytes: comparisons between monocytes and U937 monocyte-like cells. J Immunol 132:2547–2551

    CAS  PubMed  Google Scholar 

  • Shevach EM (2006) From vanilla to 28 flavors: multiple varieties of T regulatory cells. Immunity 25:195–201

    Article  CAS  PubMed  Google Scholar 

  • Shi GP, Villadangos JA, Dranoff G, Small C, Gu L, Haley KJ, Riese R, Ploegh HL, Chapman HA (1999) Cathepsin S required for normal MHC class II peptide loading and germinal center development. Immunity 10:197–206

    Article  CAS  PubMed  Google Scholar 

  • Shi GP, Bryant RA, Riese R, Verhelst S, Driessen C, Li Z, Bromme D, Ploegh HL, Chapman HA (2000) Role for cathepsin F in invariant chain processing and major histocompatibility complex class II peptide loading by macrophages. J Exp Med 191:1177–1186

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sipila KH, Ranga V, Rappu P, Mali M, Pirila L, Heino I, Jokinen J, Kapyla J, Johnson MS, Heino J (2017) Joint inflammation related citrullination of functional arginines in extracellular proteins. Sci Rep 7:8246

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sloan VS, Cameron P, Porter G, Gammon M, Amaya M, Mellins E, Zaller DM (1995) Mediation by HLA-DM of dissociation of peptides from HLA-DR. Nature 375:802–806

    Article  CAS  PubMed  Google Scholar 

  • Sofron A, Ritz D, Neri D, Fugmann T (2016) High-resolution analysis of the murine MHC class II immunopeptidome. Eur J Immunol 46:319–328

    Article  CAS  PubMed  Google Scholar 

  • Spencer CT, Dragovic SM, Conant SB, Gray JJ, Zheng M, Samir P, Niu X, Moutaftsi M, Van Kaer L, Sette A, Link AJ, Joyce S (2013) Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses. Eur J Immunol 43:1162–1172

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Steinman RM, Brodie SE, Cohn ZA (1976) Membrane flow during pinocytosis. A stereologic analysis. J Cell Biol 68:665–687

    Article  CAS  PubMed  Google Scholar 

  • Steinman RM, Hawiger D, Liu K, Bonifaz L, Bonnyay D, Mahnke K, Iyoda T, Ravetch J, Dhodapkar M, Inaba K, Nussenzweig M (2003) Dendritic cell function in vivo during the steady state: a role in peripheral tolerance. Ann N Y Acad Sci 987:15–25

    Article  CAS  PubMed  Google Scholar 

  • Stoeckle C, Sommandas V, Adamopoulou E, Belisle K, Schiekofer S, Melms A, Weber E, Driessen C, Boehm BO, Tolosa E, Burster T (2009) Cathepsin G is differentially expressed in primary human antigen-presenting cells. Cell Immunol 255:41–45

    Article  CAS  PubMed  Google Scholar 

  • Stoeckle C, Quecke P, Ruckrich T, Burster T, Reich M, Weber E, Kalbacher H, Driessen C, Melms A, Tolosa E (2012) Cathepsin S dominates autoantigen processing in human thymic dendritic cells. J Autoimmun 38:332–343

    Article  CAS  PubMed  Google Scholar 

  • Strug I, Calvo-Calle JM, Green KM, Cruz J, Ennis FA, Evans JE, Stern LJ (2008) Vaccinia peptides eluted from HLA-DR1 isolated from virus-infected cells are recognized by CD4+ T cells from a vaccinated donor. J Proteome Res 7:2703–2711

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sukseree S, Mildner M, Rossiter H, Pammer J, Zhang CF, Watanapokasin R, Tschachler E, Eckhart L (2012) Autophagy in the thymic epithelium is dispensable for the development of self-tolerance in a novel mouse model. PLoS One 7:e38933

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Surh CD, Gao EK, Kosaka H, Lo D, Ahn C, Murphy DB, Karlsson L, Peterson P, Sprent J (1992) Two subsets of epithelial cells in the thymic medulla. J Exp Med 176:495–505

    Article  CAS  PubMed  Google Scholar 

  • Surh CD, Lee DS, Fung-Leung WP, Karlsson L, Sprent J (1997) Thymic selection by a single MHC/peptide ligand produces a semidiverse repertoire of CD4+ T cells. Immunity 7:209–219

    Article  CAS  PubMed  Google Scholar 

  • Takeshige K, Baba M, Tsuboi S, Noda T, Ohsumi Y (1992) Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction. J Cell Biol 119:301–311

    Article  CAS  PubMed  Google Scholar 

  • Tewari MK, Sinnathamby G, Rajagopal D, Eisenlohr LC (2005) A cytosolic pathway for MHC class II-restricted antigen processing that is proteasome and TAP dependent. Nat Immunol 6:287–294

    Article  CAS  PubMed  Google Scholar 

  • Thelemann C, Eren RO, Coutaz M, Brasseit J, Bouzourene H, Rosa M, Duval A, Lavanchy C, Mack V, Mueller C, Reith W, Acha-Orbea H (2014) Interferon-gamma induces expression of MHC class II on intestinal epithelial cells and protects mice from colitis. PLoS One 9:e86844

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tolosa E, Li W, Yasuda Y, Wienhold W, Denzin LK, Lautwein A, Driessen C, Schnorrer P, Weber E, Stevanovic S, Kurek R, Melms A, Bromme D (2003) Cathepsin V is involved in the degradation of invariant chain in human thymus and is overexpressed in myasthenia gravis. J Clin Invest 112:517–526

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Trombetta ES, Ebersold M, Garrett W, Pypaert M, Mellman I (2003) Activation of lysosomal function during dendritic cell maturation. Science 299:1400–1403

    Article  CAS  PubMed  Google Scholar 

  • Underhill DM, Goodridge HS (2012) Information processing during phagocytosis. Nat Rev Immunol 12:492–502

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • van Ham M, van Lith M, Lillemeier B, Tjin E, Gruneberg U, Rahman D, Pastoors L, van Meijgaarden K, Roucard C, Trowsdale J, Ottenhoff T, Pappin D, Neefjes J (2000) Modulation of the major histocompatibility complex class II-associated peptide repertoire by human histocompatibility leukocyte antigen (HLA)-DO. J Exp Med 191:1127–1136

    Article  PubMed  PubMed Central  Google Scholar 

  • van Kasteren SI, Overkleeft HS (2014) Endo-lysosomal proteases in antigen presentation. Curr Opin Chem Biol 23:8–15

    Article  CAS  PubMed  Google Scholar 

  • Vandenabeele S, Hochrein H, Mavaddat N, Winkel K, Shortman K (2001) Human thymus contains 2 distinct dendritic cell populations. Blood 97:1733–1741

    Article  CAS  PubMed  Google Scholar 

  • Veerappan Ganesan AP, Eisenlohr LC (2017) The elucidation of non-classical MHC class II antigen processing through the study of viral antigens. Curr Opin Virol 22:71–76

    Article  CAS  PubMed  Google Scholar 

  • Vignali DA (2012) Mechanisms of T(reg) suppression: still a long way to go. Front Immunol 3:191

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Villadangos JA, Ploegh HL (2000) Proteolysis in MHC class II antigen presentation: who's in charge? Immunity 12:233–239

    Article  CAS  PubMed  Google Scholar 

  • Villadangos JA, Bryant RA, Deussing J, Driessen C, Lennon-Dumenil AM, Riese RJ, Roth W, Saftig P, Shi GP, Chapman HA, Peters C, Ploegh HL (1999) Proteases involved in MHC class II antigen presentation. Immunol Rev 172:109–120

    Article  CAS  PubMed  Google Scholar 

  • Villadangos JA, Driessen C, Shi GP, Chapman HA, Ploegh HL (2000) Early endosomal maturation of MHC class II molecules independently of cysteine proteases and H-2DM. EMBO J 19:882–891

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Villadangos JA, Cardoso M, Steptoe RJ, van Berkel D, Pooley J, Carbone FR, Shortman K (2001) MHC class II expression is regulated in dendritic cells independently of invariant chain degradation. Immunity 14:739–749

    Article  CAS  PubMed  Google Scholar 

  • Villasenor J, Besse W, Benoist C, Mathis D (2008) Ectopic expression of peripheral-tissue antigens in the thymic epithelium: probabilistic, monoallelic, misinitiated. Proc Natl Acad Sci U S A 105:15854–15859

    Article  PubMed  PubMed Central  Google Scholar 

  • Vogt AB, Kropshofer H, Moldenhauer G, Hammerling GJ (1996) Kinetic analysis of peptide loading onto HLA-DR molecules mediated by HLA-DM. Proc Natl Acad Sci U S A 93:9724–9729

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Walter W, Loos M, Maeurer MJ (1999) Differential expression of alternative H2-M isoforms in B cells, dendritic cells and macrophages by proinflammatory cytokines. Mol Immunol 36:733–743

    Article  CAS  PubMed  Google Scholar 

  • Weber DA, Evavold BD, Jensen PE (1996) Enhanced dissociation of HLA-DR-bound peptides in the presence of HLA-DM. Science 274:618–620

    Article  CAS  PubMed  Google Scholar 

  • West MA, Prescott AR, Eskelinen EL, Ridley AJ, Watts C (2000) Rac is required for constitutive macropinocytosis by dendritic cells but does not control its downregulation. Curr Biol 10:839–848

    Article  CAS  PubMed  Google Scholar 

  • West LC, Grotzke JE, Cresswell P (2013) MHC class II-restricted presentation of the major house dust mite allergen Der p 1 is GILT-dependent: implications for allergic asthma. PLoS One 8:e51343

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wiman K, Curman B, Forsum U, Klareskog L, Malmnas-Tjernlund U, Rask L, Tragardh L, Peterson PA (1978) Occurrence of Ia antigens on tissues on non-lymphoid origin. Nature 276:711–713

    Article  CAS  PubMed  Google Scholar 

  • Wolf AJ, Arruda A, Reyes CN, Kaplan AT, Shimada T, Shimada K, Arditi M, Liu G, Underhill DM (2011) Phagosomal degradation increases TLR access to bacterial ligands and enhances macrophage sensitivity to bacteria. J Immunol 187:6002–6010

    Article  CAS  PubMed  Google Scholar 

  • Wu C, Aichinger M, Nedjic J, Klein L (2013) Thymic epithelial cells use macroautophagy to turn their inside out for CD4 T cell tolerance. Autophagy 9:931–932

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wucherpfennig KW, Strominger JL (1995) Molecular mimicry in T cell-mediated autoimmunity: viral peptides activate human T cell clones specific for myelin basic protein. Cell 80:695–705

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xing Y, Hogquist KA (2012) T-cell tolerance: central and peripheral. Cold Spring Harb Perspect Biol 4

  • Xiu F, Cote MH, Bourgeois-Daigneault MC, Brunet A, Gauvreau ME, Shaw A, Thibodeau J (2011) Cutting edge: HLA-DO impairs the incorporation of HLA-DM into exosomes. J Immunol 187:1547–1551

    Article  CAS  PubMed  Google Scholar 

  • Yadav M, Stephan S, Bluestone JA (2013) Peripherally induced tregs—role in immune homeostasis and autoimmunity. Front Immunol 4:232

    Article  PubMed  PubMed Central  Google Scholar 

  • Yang SJ, Ahn S, Park CS, Holmes KL, Westrup J, Chang CH, Kim MG (2006) The quantitative assessment of MHC II on thymic epithelium: implications in cortical thymocyte development. Int Immunol 18:729–739

    Article  CAS  PubMed  Google Scholar 

  • Yi W, Seth NP, Martillotti T, Wucherpfennig KW, Sant'Angelo DB, Denzin LK (2010) Targeted regulation of self-peptide presentation prevents type I diabetes in mice without disrupting general immunocompetence. J Clin Invest 120:1324–1336

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yin L, Calvo-Calle JM, Dominguez-Amorocho O, Stern LJ (2012) HLA-DM constrains epitope selection in the human CD4 T cell response to vaccinia virus by favoring the presentation of peptides with longer HLA-DM-mediated half-lives. J Immunol 189:3983–3994

    Article  CAS  PubMed  Google Scholar 

  • Yin L, Trenh P, Guce A, Wieczorek M, Lange S, Sticht J, Jiang W, Bylsma M, Mellins ED, Freund C, Stern LJ (2014) Susceptibility to HLA-DM protein is determined by a dynamic conformation of major histocompatibility complex class II molecule bound with peptide. J Biol Chem 289:23449–23464

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoon T, Macmillan H, Mortimer SE, Jiang W, Rinderknecht CH, Stern LJ, Mellins ED (2012) Mapping the HLA-DO/HLA-DM complex by FRET and mutagenesis. Proc Natl Acad Sci U S A 109:11276–11281

    Article  PubMed  PubMed Central  Google Scholar 

  • Zarutskie JA, Busch R, Zavala-Ruiz Z, Rushe M, Mellins ED, Stern LJ (2001) The kinetic basis of peptide exchange catalysis by HLA-DM. Proc Natl Acad Sci U S A 98:12450–12455

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zawada AM, Rogacev KS, Rotter B, Winter P, Marell RR, Fliser D, Heine GH (2011) SuperSAGE evidence for CD14++CD16+ monocytes as a third monocyte subset. Blood 118:e50–e61

    Article  CAS  PubMed  Google Scholar 

  • Zhou D, Li P, Lin Y, Lott JM, Hislop AD, Canaday DH, Brutkiewicz RR, Blum JS (2005) Lamp-2a facilitates MHC class II presentation of cytoplasmic antigens. Immunity 22:571–581

    Article  CAS  PubMed  Google Scholar 

  • Zhou Z, Callaway KA, Weber DA, Jensen PE (2009) Cutting edge: HLA-DM functions through a mechanism that does not require specific conserved hydrogen bonds in class II MHC-peptide complexes. J Immunol 183:4187–4191

    Article  CAS  PubMed  Google Scholar 

  • Zhou Z, Reyes-Vargas E, Escobar H, Rudd B, Rockwood AL, Delgado JC, He X, Jensen PE (2016) Type 1 diabetes associated HLA-DQ2 and DQ8 molecules are relatively resistant to HLA-DM mediated release of invariant chain-derived CLIP peptides. Eur J Immunol 46:834–845

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhou Z, Reyes-Vargas E, Escobar H, Chang KY, Barker AP, Rockwood AL, Delgado JC, He X, Jensen PE (2017) Peptidomic analysis of type 1 diabetes associated HLA-DQ molecules and the impact of HLA-DM on peptide repertoire editing. Eur J Immunol 47:314–326

    Article  CAS  PubMed  Google Scholar 

Download references

Funding

This study was funded by grant AI-127869 from the US National Institutes of Health.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lawrence J. Stern.

Ethics declarations

This article does not contain any studies with human participants or animals performed by any of the authors.

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

This article is part of the Topical Collection on Biology and Evolution of Antigen Presentation

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Jurewicz, M.M., Stern, L.J. Class II MHC antigen processing in immune tolerance and inflammation. Immunogenetics 71, 171–187 (2019). https://doi.org/10.1007/s00251-018-1095-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00251-018-1095-x

Keywords

Navigation