Skip to main content

Advertisement

Log in

Multi-decadal decline in reef fish abundance and species richness in the southeast USA assessed by standardized trap catches

  • Original paper
  • Published:
Marine Biology Aims and scope Submit manuscript

Abstract

Reef fish species naturally fluctuate in abundance over various temporal and spatial scales, but recent broad-scale declines in abundance have been observed worldwide and attributed to various anthropogenic influences. We used 25 years of fishery-independent trap data (N = 11,237 trap hauls) to examine the spatial and temporal variability in temperate reef fish abundance along the southeast coast of the USA, a relatively understudied region with many economically important reef fish species. Overall, 441,298 individuals from 118 species were caught in the trap survey. Number of species and total number of individuals caught in the trap survey declined over the 25 years, but when separated, nontargeted fish species declined more than fishery-targeted species. For instance, traps caught a median of 18 nontargeted individuals and a median of 2–3 nontargeted reef fish species in the early 1990s, but by the 2010s, traps caught a median of fewer than three nontargeted individuals and a median of one nontarget species. Using generalized additive models, we found that the catch of fishery-targeted and nontargeted species was positively related to bottom water temperature, while depth influenced nontargeted and fishery-targeted species in opposite ways. The substantial and consistent decline in nontargeted fish species suggests that more research and management attention should be given to these often ignored species. These results suggest that the temperate reef fish community in the southeast USA is influenced by more than just fishing, perhaps including invasive species (e.g., lionfish Pterois volitans), decadal-scale environmental variability, or climate change.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  • Bacheler NM, Buckel JA (2004) Does hook type influence the catch rate, size, and injury of grouper in a North Carolina commercial fishery? Fish Res 69:303–311

    Article  Google Scholar 

  • Bacheler NM, Bailey KM, Ciannelli L, Bartolino V, Chan KS (2009) Density-dependent, landscape, and climate effects on spawning distribution of walleye pollock Theragra chalcogramma. Mar Ecol Prog Ser 391:1–12

    Article  Google Scholar 

  • Bacheler NM, Bartolino V, Reichert MJM (2013a) Influence of soak time and fish accumulation on catches of reef fishes in a multispecies trap survey. Fish Bull 111:218–232

    Article  Google Scholar 

  • Bacheler NM, Schobernd ZH, Berrane DJ, Schobernd CM, Mitchell WA, Geraldi NR (2013b) When a trap is not a trap: converging entry and exit rates and their effect on trap saturation of black sea bass (Centropristis striata). ICES J Mar Sci 70:873–882

    Article  Google Scholar 

  • Bacheler NM, Schobernd CM, Schobernd ZH, Mitchell WA, Berrane DJ, Kellison GT, Reichert MJM (2013c) Comparison of trap and underwater video gears for indexing reef fish presence and abundance in the southeast United States. Fish Res 143:81–88

    Article  Google Scholar 

  • Bacheler NM, Berrane DJ, Mitchell WA, Schobernd CM, Schobernd SH, Teer BZ, Ballenger JC (2014) Environmental conditions and habitat characteristics influence trap and video detection probabilities for reef fish species. Mar Ecol Prog Ser 517:1–14

    Article  Google Scholar 

  • Bartolino V, Ciannelli L, Bacheler NM, Chan KS (2012) Ontogeny and sex disentangle density-dependent and density-independent spatiotemporal dynamics of a marine fish population. Ecology 92:189–200

    Article  Google Scholar 

  • Bell RJ, Richardson DE, Hare JA, Lynch PD, Fratantoni PS (2015) Disentangling the effects of climate, abundance, and size on the distribution of marine fish: an example based on four stocks from the Northeast US shelf. ICES J Mar Sci 72:1311–1322

    Article  Google Scholar 

  • Bellwood DR, Hughes TP, Folke C, Nyström M (2004) Confronting the coral reef crisis. Nature 429:827–833

    Article  CAS  Google Scholar 

  • Berg Å, Tjernberg M (1996) Common and rare Swedish vertebrates—distribution and habitat preferences. Biodivers Conserv 5:101–128

    Article  Google Scholar 

  • Boulinier T, Nichols JD, Sauer JR, Hines JE, Pollock KH (1998) Estimating species richness: the importance of heterogeneity in species detectability. Ecology 79:1018–1028

    Article  Google Scholar 

  • Bunge J, Fitzpatrick M (1993) Estimating the number of species: a review. J Am Stat Assoc 88:364–373

    Google Scholar 

  • Burnham KP, Anderson DR (2002) Model selection and multimodal inference: a practical information-theoretic approach, 2nd edn. Springer, New York

    Google Scholar 

  • Cadrin SX, Secor DH (2009) Accounting for spatial population structure in stock assessment: past, present, and future. In: Rothschild BJ, Beamish R (eds) The future of fishery science in North America. Springer, New York, pp 405–426

    Chapter  Google Scholar 

  • Christensen V, Coll M, Piroddi C, Steenbeek J, Buszowski J, Pauly D (2014) A century of fish biomass decline in the ocean. Mar Ecol Prog Ser 512:155–166

    Article  Google Scholar 

  • Ciannelli L, Bartolino V, Chan KS (2012) Non-additive and non-stationary properties in the spatial distribution of a large marine fish population. Proc R Soc B 279:3635–3642

    Article  Google Scholar 

  • Ciannelli L, Fisher JAD, Skern-Mauritzen M, Hunsicker ME, Hidalgo M, Frank KT, Bailey KM (2013) Theory, consequences and evidence of eroding population spatial structure in harvested marine fish: a review. Mar Ecol Prog Ser 480:227–243

    Article  Google Scholar 

  • Coggins LG Jr, Bacheler NM, Gwinn DC (2014) Occupancy models for monitoring marine fish: a Bayesian hierarchical approach to model imperfect detection with a novel gear combination. PLoS ONE 9:e108302. doi:10.1371/journal.pone.0108302

    Article  Google Scholar 

  • Coleman FC, Koenig CC, Huntsman GR, Musick JA, Eklund AM, McGovern JC, Chapman RC, Sedberry GR, Grimes CB (2000) Long-lived reef fishes: the grouper-snapper complex. Fisheries 25:14–20

    Article  Google Scholar 

  • Coll M, Santojanni A, Palomera I, Arneri E (2009) Food-web changes in the Adriatic Sea over the last three decades. Mar Ecol Prog Ser 381:17–37

    Article  Google Scholar 

  • Collins MR (1990) A comparison of three fish trap designs. Fish Res 9:325–332

    Article  Google Scholar 

  • Cushing DH (1990) Plankton production and year-class strength in fish populations: an update of the match-mismatch hypothesis. Adv Mar Biol 26:249–293

    Article  Google Scholar 

  • Dunning JB, Danielson BJ, Pulliam RH (1992) Ecological processes that affect populations in complex landscapes. Oikos 65:169–175

    Article  Google Scholar 

  • Frank KT, Petrie B, Shackell NL (2007) The ups and downs of trophic control in continental shelf ecosystems. Trends Ecol Evol 22:236–242

    Article  Google Scholar 

  • Gaston KJ (1994) Rarity. Chapman & Hall, London

    Book  Google Scholar 

  • Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4:379–391

    Article  Google Scholar 

  • Gotelli NJ, Dorazio RM, Ellison AM, Grossman GD (2010) Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models. Philos Trans R Soc B 365:3621–3631

    Article  Google Scholar 

  • Hastie TJ, Tibshirani RJ (1990) Generalized additive models. Chapman & Hall, New York

    Google Scholar 

  • Hughes TP, Baird AH, Bellwood DR et al (2003) Climate change, human impacts, and the resilience of coral reefs. Science 301:929–933

    Article  CAS  Google Scholar 

  • Hutchings JA, Baum JK (2005) Measuring marine fish biodiversity: temporal changes in abundance, life history and demography. Philos Trans R Soc B 360:315–338

    Article  Google Scholar 

  • Hyun KH, He R (2010) Coastal upwelling in the South Atlantic Bight: a revisit of the 2003 cold event using long term observations and model hindcast solutions. J Mar Syst 83:1–13

    Article  Google Scholar 

  • Iles TD, Sinclair M (1982) Atlantic herring: stock discreteness and abundance. Science 215:627–633

    Article  CAS  Google Scholar 

  • Jennings S, Greenstreet SPR, Hill L, Piet GJ, Pinnegar JK, Warr KJ (2002) Long-term trends in the trophic structure of the North Sea fish community: evidence from stable-isotope analysis, size-spectra and community metrics. Mar Biol 141:1085–1097

    Article  Google Scholar 

  • Kellison GT, McDonough V, Harper DE, Tilmant JT (2012) Coral reef assemblage shifts and declines in Biscayne National Park, Florida, USA. Bull Mar Sci 88:147–182

    Article  Google Scholar 

  • Kenchington TJ, Kenchington ELR (2013) Biodiversity metrics for use in the ecosystem approach to ocean management. Canadian Technical Report of Fisheries and Aquatic Sciences 3059. Fisheries and Oceans, Dartmouth

  • Kendall MS, Bauer LJ, Jeffrey CFG (2008) Influence of benthic features and fishing pressure on size and distribution of three exploited reef fishes from the southeastern United States. Trans Am Fish Soc 137:1134–1146

    Article  Google Scholar 

  • Kimura DK, Somerton DA (2006) Review of statistical aspects of survey sampling for marine fisheries. Rev Fish Sci 14:245–283

    Article  Google Scholar 

  • Kirby RR, Beaugrand G, Lindley JA (2009) Synergistic effects of climate and fishing in a marine ecosystem. Ecosystems 12:548–561

    Article  Google Scholar 

  • Lekve K, Boulinier T, Stenseth NC, Gjøsæter FJ, Hines JE, Nichols JD (2002) Spatio-temporal dynamics of species richness in coastal fish communities. Proc R Soc Lond B 269:1781–1789

    Article  Google Scholar 

  • Lennon JJ, Koleff P, Greenwood JJD, Gaston KJ (2004) Contribution of rarity and commonness to patterns of species richness. Ecol Lett 7:81–87

    Article  Google Scholar 

  • Lesser MP, Slattery M (2011) Phase shift to algal dominated communities at mesophotic depths associated with lionfish (Pterois volitans) invasion on a Bahamian coral reef. Biol Invasions 13:1855–1868

    Article  Google Scholar 

  • MacKenzie BR, Köster FW (2004) Fish production and climate: sprat in the Baltic Sea. Ecology 85:784–794

    Article  Google Scholar 

  • MacKenzie DI, Nichols JD, Lachman GB, Droege S, Royle JA, Langtimm CA (2002) Estimating site occupancy rates when detection probabilities are less than one. Ecology 83:2248–2255

    Article  Google Scholar 

  • Maunder MN, Punt AE (2004) Standardizing catch and effort data: a review of recent approaches. Fish Res 70:141–159

    Article  Google Scholar 

  • McGovern JC, Sedberry GR, Harris PJ (1998) The status of reef fish stocks off the Southeast United States, 1983–1996. Proc Gulf Caribb Fish Inst 50:871–895

    Google Scholar 

  • Mitchell WA, Kellison GT, Bacheler NM, Potts JC, Schobernd CM, Hale LF (2014) Depth-related distribution of postjuvenile red snapper in southeastern U.S. Atlantic Ocean waters: ontogenic patterns and implications for management. Mar Coast Fish 6:142–155

    Article  Google Scholar 

  • Munday PL, Jones GP, Pratchett MS, Williams AJ (2008) Climate change and the future of coral reef fishes. Fish Fish 9:261–285

    Article  Google Scholar 

  • Muñoz RC, Currin CA, Whitfield PE (2011) Diet of invasive lionfish on hard bottom reefs of the Southeast USA: insights from stomach contents and stable isotopes. Mar Ecol Prog Ser 432:181–193

    Article  Google Scholar 

  • Murphy HM, Jenkins GP (2010) Observational methods used in marine spatial monitoring of fishes and associated habitats: a review. Mar Freshw Res 61:236–252

    Article  CAS  Google Scholar 

  • Neter J, Wasserman W, Kutner MH (1989) Applied linear regression models, 2nd edn. Irwin, Homewood

    Google Scholar 

  • Paddack MJ, Reynolds JD et al (2009) Recent region-wide declines in Caribbean reef fish abundance. Curr Biol 19:590–595

    Article  CAS  Google Scholar 

  • Pandolfi JM, Bradbury RH et al (2003) Global trajectories of the long-term decline of coral reef ecosystems. Science 301:955–958

    Article  CAS  Google Scholar 

  • Parker RO Jr, Dixon RL (1998) Changes in a North Carolina reef fish community after 15 years of intense fishing—global warming implications. Trans Am Fish Soc 127:908–920

    Article  Google Scholar 

  • Parrish JD (1987) The trophic biology of snapper and groupers. In: Polovina JJ, Ralston S (eds) Tropical snappers and groupers: biology and fisheries management. Westview, Boulder, pp 405–463

    Google Scholar 

  • Powles H, Barans CA (1980) Groundfish monitoring in sponge-coral areas off the southeastern United States. Mar Fish Rev 42:21–35

    Google Scholar 

  • Rogers SI, Ellis JR (2000) Changes in the demersal fish assemblages of British coastal waters during the 20th century. ICES J Mar Sci 57:866–881

    Article  Google Scholar 

  • Rudershausen PJ, Williams EH, Buckel JA, Potts JC, Manooch CS III (2008) Comparison of reef fish catch per unit effort and total mortality between the 1970s and 2005–2006 in Onslow Bay, North Carolina. Trans Am Fish Soc 137:1389–1405

    Article  Google Scholar 

  • Schobernd CM, Sedberry GR (2009) Shelf-edge and upper-slope reef fish assemblages in the South Atlantic Bight: habitat characteristics, spatial variation, and reproductive behavior. Bull Mar Sci 84:67–92

    Google Scholar 

  • Sedberry GR, Van Dolah RF (1984) Demersal fish assemblages associated with hard bottom habitat in the South Atlantic Bight of the U.S.A. Environ Biol Fish 11:241–258

    Article  Google Scholar 

  • Semmens BX, Ruesink JL, Pattengill-Semmens CV (2000) Estimating multi-species trends in reef fishes from a large volunteer generated data set: a new tool for management. In: Proceedings of the 9th international coral reef symposium, vol 2, pp 1071–1078

  • Shertzer KW, Williams EH, Taylor JC (2009) Spatial structure and temporal patterns in a large marine ecosystem: exploited reef fishes of the southeast United States. Fish Res 100:126–133

    Article  Google Scholar 

  • Stratton M (2011) An ecosystem perspective: temporal analyses of the reef fish assemblage in southeast U.S. Atlantic continental shelf waters. Master thesis, College of Charleston, South Carolina

  • R Core Team (2014) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://www.r-project.org/. Accessed 11 June 2015

  • Walters CJ, Martell SJD (2004) Fisheries ecology and management. Princeton University Press, Princeton

    Google Scholar 

  • Winfree R, Fox JW, Williams NM, Reilly JR, Cariveau DP (2015) Abundance of common species, not species richness, drives delivery of real-world ecosystem services. Ecol Lett 18:626–635

    Article  Google Scholar 

  • Wood SN (2006) Generalized additive models: an introduction with R. Chapman & Hall/CRC, Boca Raton

    Google Scholar 

  • Wood SN (2011) Fast stable restricted maximum likelihood for marginal likelihood estimation of semiparametric generalized linear models. J R Stat Soc B Stat Methodol 73:3–36

    Article  Google Scholar 

  • Wood RJ, Austin HM (2009) Synchronous multidecadal fish recruitment patterns in Chesapeake Bay, USA. Can J Fish Aquat Sci 66:496–508

    Article  Google Scholar 

  • Wyanski DM, White DB, Barans CA (2000) Growth, population age structure, and aspects of the reproductive biology of snowy grouper, Epinephelus niveatus, off North Carolina and South Carolina. Fish Bull 98:199–212

    Google Scholar 

  • Zhao J, Cao J, Tian S, Chen Y, Zhang S, Wang Z, Zhou X (2014) A comparison between two GAM models in quantifying relationships of environmental variables with fish richness and diversity indices. Aquat Ecol 48:297–312

    Article  CAS  Google Scholar 

  • Zuur AF, Savaliev AA, Ieno EN (2012) Zero inflated models and generalized linear mixed models with R. Highland Statistics, Newburgh

    Google Scholar 

Download references

Acknowledgments

We thank the captains and crews of the RV Palmetto, RV Savannah, NOAA Ship Pisces, and NOAA Ship Nancy Foster, SERFS staff, and numerous volunteers for making field work possible. We thank N. Ballew, A. Hohn, T. Kellison, P. Marraro, K. Shertzer, and two reviewers for providing comments on earlier versions of this manuscript. This work was funded by the National Marine Fisheries Service. Data collection for this study was allowed through various Scientific Research Permits, and research followed the guidelines of the US Government Principles for the Utilization and Care of Vertebrate Animals Used in Testing, Research, and Training (http://grants.nih.gov/grants/olaw/references/phspol.htm#USGovPrinciples). This article does not contain any studies with human participants performed by any of the authors. The views and opinions expressed or implied in this article are those of the authors and do not necessarily reflect the position of the National Marine Fisheries Service, NOAA.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nathan M. Bacheler.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Responsible Editor: K. Clements.

Reviewed by undisclosed experts.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Bacheler, N.M., Smart, T.I. Multi-decadal decline in reef fish abundance and species richness in the southeast USA assessed by standardized trap catches. Mar Biol 163, 26 (2016). https://doi.org/10.1007/s00227-015-2774-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00227-015-2774-x

Keywords

Navigation