Abstract
A bacterial strain ODT-83 is isolated from oysters, which is capable of adsorbing norovirus (NoV) via histo-blood group antigen-like (HBGA-like) substances. To better understand its genetic background associated with the production of HBGA-like substances, the genome of the ODT-83 was completely sequenced and analyzed. The ODT-83 only contains one circular chromosome, with a length of 5,384,159 bp. Both the 16S rRNA gene phylogeny and the average nucleotide identity (ANI) analyses confirm that the ODT-83 is a new Pseudomonas oleovorans strain. The whole genome encodes a total of 5037 predicted open reading frames (ORFs), 66 tRNA genes and 12 rRNA genes. Two gene clusters are detected on the genome, which are involved in the synthesis of polysaccharides of alginate and Pel, respectively. These results lay the foundation for further research on the interaction between the P. oleovorans strain ODT-83 and NoV.
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This study was funded by the National Key R&D Program of China (2017YFC1600703) and the National Natural Science Foundation of China (31601570, 41876195).
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Communicated by Erko Stackebrandt.
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Yang, M., Han, F., Yu, Y. et al. Complete genome sequence of the Pseudomonas oleovorans strain ODT-83 isolated from oyster. Arch Microbiol 203, 3117–3124 (2021). https://doi.org/10.1007/s00203-021-02303-9
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DOI: https://doi.org/10.1007/s00203-021-02303-9