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Identification of seven new humanMHC class I region genes around theHLA-F locus

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Abstract

Using cDNA hybridization selection techniques, we identified seven new genes in a 280 kilobase YAC coveting theHLA-F locus. The new genes were mapped back to the YAC by a combination of optical restriction mapping and pulse field gel electrophoresis. Northern analysis of individual clones demonstrated the presence of either different mRNA sizes or different expression patterns. Two of the cDNA clones were expressed only in lymphoid cell lines: one in Jurkat cells (T cell) and another in JY cells (B cell). All the genes lacked sequence similarity to any known classical and non-classical major histocompatibility complex (MHC) class I genes, indicating that theMHC class I region has more functions than anticipated. Of the seven new genes, one is highly similar (97%) to mouse 60S ribosomal protein, and another is homologous to diubiquitin proteins. Of the two G-coupled receptor-like cDNAs, one was fully sequenced and found to be an olfactory receptor-like gene. The study strengthens evidence that theMHC complex not only plays a key role in the immune system, but also contributes to non-immunological functions.

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References

  • Abe, K., Wei, J.-F., Wei, F.,-S., Hsu, Y.-C., Uehara, H., Artzt, K., and Bennett, D. Searching for coding sequences in the mammalian genome: the H-2K region of the mouse MHC is replete with genes expressed in embryos.EMBO J 7: 3441–3449, 1988

    PubMed  CAS  Google Scholar 

  • Amadou, C., Ribouchon, M. T., Mattei, M. G., Jenkins, N. A., Gilbert, D. J., Copland, N. G., Avoustin, P., and Pontarotti, P. Localization of new genes and markers to the distal part of the human major histocompatibility complex (MHC) region and comparison with the mouse: new insights into the evolution of mammalian genomes.Genomics 26: 9–20, 1995

    Article  PubMed  CAS  Google Scholar 

  • Beck, S., Kelly, A., Radley, E., Khurshid, F., Alderton, R. P., and Trowsdale, J. DNA sequence analysis of 66 kb of the human MHC class 1I region encoded a cluster of genes for antigen processing.J Mol Biol 228: 433–441, 1992

    Article  PubMed  CAS  Google Scholar 

  • Browning, J. L., Ngam-ek, A., Lawton, P., DeMarinis, J., Tizard, R., Chow, P., Hession, C., O’Brine-Greco, B., Fley, S. F., and Ware, C. F. Lymphotoxin-b, a novel member of the TNF family that forms a heteromeric complex with lymphotoxin on the cell surface.Cell 72: 847–856, 1993

    Article  PubMed  CAS  Google Scholar 

  • Buckler, A. J., Chang, D. D., Graw, S. L., Brook, J. D., Haber, D. A., Sharp, P. A., and Housman, D. Exon amplification: a strategy to isolate mammalian genes based on RNA splicing.Proc Natl Acad Sci USA 88: 4005–4009, 1991

    Article  PubMed  CAS  Google Scholar 

  • Cai, W., Aburantani, H., Stanton, V. P., Housman: D. E., Wang, Y., and Schwartz, D. C. Ordered restriction endonuclease maps of yeast artificial chromosomes created by optical mapping on surfaces.Proc Natl Acad Sci USA 92: 5164–5168, 1995

    Article  PubMed  CAS  Google Scholar 

  • Call, K. M., Glaser, T., Ito, C. Y., Buckler, A. J., Pelletier, J., Haber, D. A., Sharp, P. A., and Housman, D. E. Isolation and characterization of a zinc finger polypeptide gene at the human chromosome 11 Wilms’ tumor locus.Cell 60: 509–520, 1990

    Article  PubMed  CAS  Google Scholar 

  • Chassin, D., Bellet, D., and Koman, A. The human homology of ribosomal protein S18.Nucleic Acids Res 31: 745, 1993

    Article  Google Scholar 

  • Church, G. M. and Gilbert, W. Genomic sequencing.Proc Natl Acad Sci USA 81: 1991–1995, 1984

    Article  PubMed  CAS  Google Scholar 

  • Dunham, I., Sargent, C. A., Trowsdale, J., and Campbell, R. D. Molecular mapping of the human major histocompatibility complex by pulse field gel electrophoresis.Proc Natl Acad Sci USA 84: 7237–7241, 1987

    Article  PubMed  CAS  Google Scholar 

  • Duyk, G. M., Kim, S. W., Myers, R. M., and Cox, D. R. Exon trapping: A genetic screen to identify candidate transcribed sequences in cloned mammalian genomic DNA.Proc Natl Acad Sci USA 87: 8995–8999, 1990

    Article  PubMed  CAS  Google Scholar 

  • Elvin, P., Slynn, G., Black, D., Graham, A., Rieley, J., Anand, R., and Markham, A. F. Isolation of cDNA clones using yeast artificial chromosome probes.Nucleic Acids Res 18: 3913–3917, 1990

    Article  PubMed  CAS  Google Scholar 

  • Fan, W. F., Wei, X., Shukla, H., Parimoo, S., Xu, H. X., Sankhavaram, P., Li, Z., and Weissman, M. S. Application of cDNA selection techniques to regions of the human MHC.Genomics 17: 575–581, 1993

    Article  PubMed  CAS  Google Scholar 

  • Fan, W. F., Liu, Y.-C., Parimoo, S., and Weissman, S. M. Olfactory receptor-like genes are located in the human major histocompatibility complex.Genomics 27: 119–123, 1995

    Article  PubMed  CAS  Google Scholar 

  • Freemont, P. S., Hanson, I. M., and Trowsdale, J. A novel cystine-rich sequence motif.Cell 64: 483–484, 1991

    Article  PubMed  CAS  Google Scholar 

  • Geraghty, D. E., Pei, J., Lipsky, B., Hasen, J. A., Taillon-Miller, P., Bronson, S. K., and Chaplin, D. D. Cloning and physical mapping of the HLA class I region spanning the HLA-E to HLA-F interval by using yeast artificial chromosomes.Proc Natl Acad Sci USA 89: 2669–2673, 1992

    Article  PubMed  CAS  Google Scholar 

  • Hanson, I. M., German, P., Solomon, E., Cheah, K. S. E., and Trowsdale, J. The human pro-α2(XI) collagen gene (collA2) maps to the centromeric border of the major histocompatibility complex.Genomics 5: 925–931, 1989

    Article  PubMed  CAS  Google Scholar 

  • Hanson, I. M., Poutska, A., and Trowsdale, J. New genes in the class II region of the mouse and man.Genomics 10: 417–424, 1991

    Article  PubMed  CAS  Google Scholar 

  • Janatipour, M., Naumov, Y., Ando, A., Sugimura, K., Naoaki, O., Tsuji, K., Abe, K., and Inoko, H. Search for MHC-associated genes in human: five genes centromeric to HLA-DP with yet unknown functions.Immunogenetics 35: 272–278, 1992

    Article  PubMed  CAS  Google Scholar 

  • Kendall, E., Sargent, C. A., and Campbell, R. D. Human major histocompatibility complex contains a new cluster of genes between the HLA-D and complement C4 loci.Nucleic Acids Res 18: 7251–7257, 1990

    Article  PubMed  CAS  Google Scholar 

  • Link, A. J. and Olson, M. V. Physical map of the Saccharomyces cerevisiae genome at 110 kilobase resolution.Genetics 127: 681–698, 1991

    PubMed  CAS  Google Scholar 

  • Lovett, M., Kere, J., and Hinton, L. M. Direct selection: a method for the isolation of cDNAs encoded by large genomic regions.Proc Natl Acad Sci USA 88: 9623–9627, 1991

    Article  Google Scholar 

  • Matthieu, J. M. and Amiguet, P. Myelin/oligodendrocyte glycoprotein expression during development in normal and myelin-deficient mice.Dev Neurosci 12: 293–302, 1990

    PubMed  CAS  Google Scholar 

  • Medori, R., Tritschler, H.-J., and Gambetti, P. A rapid and simple method for labeling short DNA fragments using Taq polymerase.BioTechniques 12: 350–353, 1992

    Google Scholar 

  • Milner, C. M. and Campbell R. D. Polymorphic analysis of the three MHC-linkedHsp70 genes.Immunogenetics 36: 357–362, 1992

    Article  PubMed  CAS  Google Scholar 

  • Monaco, J. Genes in the MHC that may affect antigen processing.Curr Opin Immunol 4: 70–73, 1991

    Article  Google Scholar 

  • Pagano, M., Sun, W., Tam, S. W., Theodoras, A. M., Beer-Romero, P., Del Sal, G., Chau, V., Yew, P. R., Draetta, G. F., and Rolfe, M. Role of the ubiquitin-proteasome pathway in regulating abundance of the cyclin-dependent kinase inhibitor p27.Science 269: 682–685, 1995

    Article  PubMed  CAS  Google Scholar 

  • Parimoo, S., Patanjali, S. R., Shukla, H., Chaplin, D. D., and Weissman, S. M. cDNA selection: efficient PCR approach for the selection of cDNAs encoded in large chromosomal DNA fragments.Proc Natl Acad Sci USA 88: 9623–9627, 1991

    Article  PubMed  CAS  Google Scholar 

  • Pham-Dinh, D., Mattei, M.-G., Nussbaum, J.-L., Roussel, G., Pontarotti, P., Roeckel, N., Mather, I. H., Artzt, K., Lindahl K. F., and Dautigny, N. Myelin/oligodendrocyte glycoprotein is a member of a subset of the immunoglobulin superfamily encoded within the major histocompatibility complex.Proc Natl Acad Sci USA 90: 7990–7994, 1993

    Article  PubMed  CAS  Google Scholar 

  • Sargent, C. A., Dunham, I., Trowsdale, J., and Campbell, R. D. Human major histocompatibility complex contains genes for the major heat shock protein HSP70.Proc Natl Acad Sci USA 86: 1968–1972, 1989a

    Article  PubMed  CAS  Google Scholar 

  • Sargent, C. A., Dunham, I., and Campbell, R. D. Identification of multiple HTF-island-associated genes in the human major histocompatibility complex class III regions.EMBO J 8: 2305–2312, 1989b

    PubMed  CAS  Google Scholar 

  • Scoding, N. J., Frith, S., Linington, C., Morgan, B. P., Campbell, A. K., and Compston, D. A. S. Myelin-oligodendrocyte glycoprotein (MOG) is a surface marker of oligodendrocyte maturation.J Neuroimmunol 22: 169–176, 1989

    Article  Google Scholar 

  • Sharwar, S. M., and Rich, R. R., Ubiquitin-dependent and ubiquitin-independent proteolyfic pathway are involved in presentation of ND1 peptides by the MHC class I-B molecule H-2M3.The 9th International Congress of Immunology (Abstract 2738), p. 462, San Francisco, July 23–29, 1995

  • Spies, T., Bresnahan, M., Bahram, S., Arnold, D., Blanck, G., Mellins, E., Pious, D., and DeMars, R. A new gene in the human major histocompatibility complex II region controlling the class I antigen presentation pathway.Nature 348: 744–747, 1990

    Article  PubMed  CAS  Google Scholar 

  • Spies, T., Bresnahan, M., and Strominger, J. T. Human histocompatibility complex contains a minimum of 19 genes between the complement cluster and HLA-B.Proc Natl Acad Sci USA 86: 8955–8958, 1989

    Article  PubMed  CAS  Google Scholar 

  • Trowsdale, J., Hanson, I., Mockridge, I., Beck, S., Townsend, A., and Kelly, A. Sequences encoded in the class II region of the MHC related to the ‘ABC’ superfamily of transporters.Nature 348: 741–744, 1990

    Article  PubMed  CAS  Google Scholar 

  • Trowsdale, J. Genomic structure and functions in the MHC.Trends Genet 9: 117–122, 1993

    Article  PubMed  CAS  Google Scholar 

  • Wei, H., Fan, W. F., Xu, H., Parimoo, S., Shukla, H., Chaplin, D. D., and Weissman, S. M. Genes in one megabase of the HLA class I region.Proc Natl Acad Sci USA 90: 11870–11874, 1993

    Article  PubMed  CAS  Google Scholar 

  • Yamazaki, K., Beauchamp, G. K., Kupniewski, D., Bard, J., Thomas, L., and Boyse, E. A. Familial imprinting determines H-2 selective mating preferences.Science 240: 1331–1332, 1988

    Article  PubMed  CAS  Google Scholar 

  • Yamazaki, K., Beauchamp, G. K., Shen, F. W., Bard, J., and Boyse, E. A. Discrimination of odortypes determined by the major histocompatibility complex among outbred mice.Proc Natl Acad Sci USA 91: 3735–3738, 1994

    Article  PubMed  CAS  Google Scholar 

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The nucleotide sequence data reported in this paper have been submitted to the Genbank nucleotide sequence database and have been assigned the accession numbers U37229 (IB2), U37230 (IC4), U37231 (IF12), U37232 (IH9), U37233 (2D8), U37234 (2H6), and L35475 (IA8)

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Fan, W., Cai, W., Parimoo, S. et al. Identification of seven new humanMHC class I region genes around theHLA-F locus. Immunogenetics 44, 97–103 (1996). https://doi.org/10.1007/BF02660056

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