Skip to main content

Structural Characterization of the Heteroxylans from Poplar and Switchgrass

  • Protocol
  • First Online:
Book cover Biomass Conversion

Part of the book series: Methods in Molecular Biology ((MIMB,volume 908))

Abstract

Heteroxylans are polysaccharides with a backbone composed of 1,4-linked β-d-xylosyl residues. In hardwoods some of these xylosyl residues are substituted at O-2 with 4-O-methyl α-d-glucuronic and occasionally with α-d-glucuronic acid. In grasses, the xylan backbone is predominantly substituted with α-l-arabinofuranosyl residues (most often at O-3, but sometimes at O-2). Grass heteroxylan backbone residues may also have small amounts of α-d-glucuronic acid and/or 4-O-methyl α-d-glucuronic acid at O-2. Heteroxylans have a role in maintaining the structural integrity of the cell walls that comprise the bulk of lignocellulosic biomass. Moreover, differences in the molecular features of these hemicellulosic polysaccharides, including their degree of polymerization, degree of branching and spatial arrangement of side chains along the xylan backbone, have been correlated to altered cell wall properties (Izydorczyk MS, Biliaderis CG, Carbohydr Polym 28:33–48, 1995) and the ease with which biomass can be enzymatically converted to fermentable sugars. Thus, understanding the relationship between heteroxylan structure and biomass properties is required to engineer bioenergy crops with improved processing characteristics. In this chapter we describe some of the analytical methods we routinely use to perform in-depth structural analysis of heteroxylans from poplar and switchgrass biomass.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 159.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Izydorczyk MS, Biliaderis CG (1995) Cereal arabinoxylans: advances in structure and physicochemical properties. Carbohydr Polym 28:33–48

    Article  CAS  Google Scholar 

  2. Ebringerova A (2006) Structural diversity and application potential of hemicelluloses. Macromol Symp 232:1–12

    Article  CAS  Google Scholar 

  3. Verbruggen MA, Spronk BA, Schols HA, Beldman G, Voragen AGJ, Thomas JR, Kamerling JP, Vligenthart JFG (1998) Structures of enzymatically derived oligosaccharides from sorghum glucuronoarabinoxylan. Carbohydr Res 306:265–274

    Article  CAS  Google Scholar 

  4. Fox A, Morgan SL, Gilbart J (1989) Preparation of alditol acetates and their analysis by gas chromatography and mass spectrometry. In: Biermann CJ, McGinnis GD (Eds) Analysis of carbohydrates by GLC and MS. CRC Press: Boca Raton, FL. p 87–117

    Google Scholar 

  5. Carpita NC, Shea EM (1989) Linkage structure of carbohydrates by gas chromatography-mass spectrometry (GC-MS) of partially methylated alditol acetates. In: Biermann CJ, McGinnis GD (Eds) Analysis of carbohydrates by GLC and MS. CRC Press: Boca Raton, FL. p 157–216

    Google Scholar 

  6. Ciucanu I, Kerek F (1984) A simple and rapid method for the permethylation of carbohydrates. Carbohydr Res 131:209–217

    Article  CAS  Google Scholar 

  7. Pena MJ, Zhong R, Zhou GK, Richardson EA, O’Neill MA, Darvill AG, York WS, Ye ZH (2007) Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis. Plant Cell 19:549–563

    Article  CAS  Google Scholar 

  8. Mazumder K, York WS (2010) Structural analysis of arabinoxylans isolated from ball-milled switchgrass biomass. Carbohydr Res 345:2183–2193

    Article  CAS  Google Scholar 

  9. Shimizu K, Ishihara M, Ishihara T (1976) Hemicellulases of brown rotting fungus. Tyromyces palustris. II. Mokuzai Gakkaishi 22:618–625

    CAS  Google Scholar 

  10. Domon B, Costello CE (1988) A systematic nomenclature for carbohydrate fragmentations in FAB-MS/MS spectra of glycoconjugates. Glycoconjugate J 5:397–409

    Article  CAS  Google Scholar 

  11. Reuhs BL, Glenn J, Stephens SB, Kim JS, Christie DB, Glushka JG, Zablackis E, Albersheim P, Darvill AG, O’Neill MA (2004) l-Galactose replaces l-fucose in the pectic polysaccharide rhamnogalacturonan II synthesized by the l-fucose-deficient mur1 Arabidopsis mutant. Planta 219:147–157

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to William S. York .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Mazumder, K., Peña, M.J., O’Neill, M.A., York, W.S. (2012). Structural Characterization of the Heteroxylans from Poplar and Switchgrass. In: Himmel, M. (eds) Biomass Conversion. Methods in Molecular Biology, vol 908. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-956-3_19

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-956-3_19

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-61779-955-6

  • Online ISBN: 978-1-61779-956-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics