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References
Ahn S, Tanksley SD (1993) Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90:7980–7984
Ahn S, Anderson JA, Sorrells ME, Tanksley SD (1993) Homoeologous relationships of rice, wheat and maize chromosomes. Mol Gen Genet 241:483–490
Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, Mackill D, McCouch S, Kurata N, Lambert G, Galbraith DW, Arumuganathan K, Rao K, Walling JG, Gill N, Yu Y, Sanmiguel P, Soderlund C, Jackson S, Wing RA (2006) The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res 16:140–147
Bennetzen JL, Ma J (2003)The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. Curr Opin Plant Biol 6:128–133
Cheng Z, Buell CR, Wing RA, Gu M, Jiang J (2001)Toward a cytological characterization of the rice genome. Genome Res 11:2133–2141
Ge S, Sang T, Lu BR, Hong DY (1999)Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc Natl Acad Sci USA 96:14400–14405
Han B, Xue Y (2003)Genome-wide intraspecific DNA-sequence variations in rice. Curr Opin Plant Biol 6:134–138
Harushima Y, Yano M, Shomura A, Sato M, Shimano T, Kuboki Y, Yamamoto T, Lin SY, Antonio BA, Parco A, Kajiya H, Huang N, Yamamoto K, Nagamura Y, Kurata N, Khush GS, Sasaki T (1998)A high-density rice genetic linkage map with 2275 markers using a single F2population. Genetics 148:479–494
Huang H, Kochert G (1994)Comparative RFLP mapping of an allotetraploid wild rice species (Oryza latifolia) and cultivated rice (O. sativa). Plant Mol Biol 25:633–648
International Rice Genome Sequencing Project (2005)The map-based sequence of the rice genome. Nature 436:793–800
Jena KK, Khush GS, Kochert G (1994)Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa. Genome 37:382–389
Kaplinsky NJ, Braun DM, Penterman J, Goff SA, Freeling M (2002)Utility and distribution of conserved noncoding sequences in the grasses. Proc Natl Acad Sci USA 99:6147–6151
Khush GS (1997)Origin, dispersal, cultivation and variation of rice. Plant Mol Biol 35:25–34
Luo M, Wing RA (2003)An improved method for plant BAC library construction. Methods Mol Biol 236:3–20
Luo MC, Thomas C, You FM, Hsiao J, Ouyang S, Buell CR, Malandro M, McGuire PE, Anderson OD, Dvorak J (2003)High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82:378–389
Ma J, Bennetzen JL (2004)Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci USA 101:12404–12410
Moore G, Devos KM, Wang Z, Gale MD (1995)Cereal genome evolution. Grasses, line up and form a circle. Curr Biol 5:737–739
Pampanwar V, Engler F, Hatfield J, Blundy S, Gupta G, Soderlund C (2005)FPC web tools for rice, maize and distribution. Plant Physiol 138:116–126
Soderlund C, Humphray S, Dunham A, French L (2000)Contigs built with fingerprints, markers, and FPC V4.7. Genome Res 10:1772–1787
Soderlund C, Nelson W, Shoemaker A, Paterson A (2006)SyMAP: a system for discovering and viewing syntenic regions of FPC Maps. Genome Res 16:1159–1168
The Rice Chromosome 3 Sequencing Consortium (2005)Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Res 15:1284–1291
Vaughan DA, Morishima H, Kadowaki K (2003)Diversity in the Oryza genus. Curr Opin Plant Biol 6:139–146
Ware D, Jaiswal P, Ni J, Pan X, Chang K, Clark K, Teytelman L, Schmidt S, Zhao W, Cartinhour S, McCouch S, Stein L (2002)Gramene: a resource for comparative grass genomics. Nucl Acids Res 30:103–105
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S (2005)The Oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol 59:53–62
Wu J, Maehara T, Shimokawa T, Yamamoto S, Harada C, Takazaki Y, Ono N, Mukai Y, Koike K, Yazaki J, Fujii F, Shomura A, Ando T, Kono I, Waki K, Yamamoto K, Yano M, Matsumoto T, Sasaki T (2002)A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Plant Cell 14:525–535
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Wing, R.A. et al. (2007). The Oryza Map Alignment Project (OMAP): A New Resource for Comparative Genome Studies within Oryza. In: Rice Functional Genomics. Springer, New York, NY. https://doi.org/10.1007/0-387-48914-2_15
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DOI: https://doi.org/10.1007/0-387-48914-2_15
Publisher Name: Springer, New York, NY
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