Skip to main content
Log in

DNA methylation and gene expression differences during alternative in vitro morphogenetic processes in eggplant (Solanum melongena L.)

  • Published:
In Vitro Cellular & Developmental Biology - Plant Aims and scope Submit manuscript

Summary

In vitro-cultured cotyledon explants of eggplant (Solanum melongena L.) are capable of producing somatic embryos or shoots, depending on which growth regulators are exogenously applied (auxins versus cytokinins). Rapidly growing suspension cultures were established to model these alternative morphogenetic processes. Clear differences in DNA methylation and gene expression patterns could be detected when suspension cultures grown under different growth regulator regimes were compared by restriction fragment length polymorphism (RFLP) or Differential Display analyses. Some of the random genomic clones showing methylation pattern differences, as well as some differentially expressed transcripts were analyzed in detail. One of the genomic clones, SMG56, proved to be the first identified 1-aminocyclopropane-1-carboxylate (ACC) synthase gene in eggplant. From 15 cloned. Differential Display fragments two somatic embryogenesis (SME39, SME50) and one organogenesis (SME88) related transcripts were identified.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Altschul, S. F.; Madden, T. L.; Schäffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25:3389–3402; 1997.

    Article  PubMed  CAS  Google Scholar 

  • Arnholdt-Schmitt, B.; Holzapfel, B.; Schillinger, A.; Neumann, K. H. Variable methylation and differential replication of genomic DNA in cultured carrot root explants during growth induction as influenced by hormonal treatments. Theor. Appl. Genet. 82:283–288; 1991.

    Article  CAS  Google Scholar 

  • Brown, P. J. H.; Göbel, E.; Lörz, H. RFLP analysis of Zea mays callus cultures and their regenerated plants. Theor. Appl. Genet. 82:283–288; 1991.

    Article  Google Scholar 

  • Bucherna, N.; Okkels, F. T.; Palmgren, G. Developmental timing of transgene expression is dosage dependent. Physiol. Plant. 107:90–97; 1999.

    Article  CAS  Google Scholar 

  • Dellaporta, S. L.; Wood, J.; Hick, J. B. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1:19–21; 1983.

    CAS  Google Scholar 

  • Dudits, D.; Györgyei, J.; Bögre, L.; Bakó, L. Molecular biology of somatic embryogenesis. In: Thorpe, T. A., ed. In vitro embryogenesis in plants. Dordrecht: Kluwer Academic Publishers; 1995:267–309.

    Google Scholar 

  • Fári, M.; Nagy, L.; Csányi, M.; Mitykó, J.; Andrásfalvy, A. Agrobacterium mediated genetic transformation and plant regeneration via organogenesis and somatic embryogenesis from cotyledon leaves in eggplant (Solanum melongena L. cv. Keeskeméti lila). Plant Cell Rep. 15:82–86; 1995.

    Article  Google Scholar 

  • Feinberg, A. P.; Vogelstein, B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:6–13; 1982.

    Article  Google Scholar 

  • Felsenstein, J. PHYLIP (Phylogeny Interference Package) version 3.5c, Department of Genetics, University of Washington, Seattle; 1993.

    Google Scholar 

  • Gamborg, O. L.; Miller, R. A.; Ojima, K. Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 50:151–158; 1968.

    Article  PubMed  CAS  Google Scholar 

  • Huang, L.-H.; Farnet, C. M.; Ehrlich, K. C.; Ehrlich, M. Digestion of highly modified bacteriophage DNA by restriction endonucleases. Nucl. Acids Res. 10:1579–1591; 1982.

    Article  PubMed  CAS  Google Scholar 

  • Kende, H.; Zeevaart, J. A. D. The five classical plant hormones. Plant Cell 9:1197–1210; 1997.

    Article  PubMed  CAS  Google Scholar 

  • Liang, P.; Pardee, A. B. Differential display of cucaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967–971; 1992.

    Article  PubMed  CAS  Google Scholar 

  • LoSchiavo, F.; Pitto, L.; Giuliano, G.; Torti, G.; Nuti-Ronchi, V.; Maroniti, D.; Vergara, R.; Orselli, S.; Terzi, M. DNA methylation of embryogenic carrot cell cultures and its variations as caused by mutation, differentiation, hormones and hypomethylating drugs. Theor. Appl. Genet. 77:325–331; 1989.

    Article  CAS  Google Scholar 

  • Matsuoka, H.; Hirata, K. NAA-induced organogenesis and embryogenesis in hypocotyl callus of Solanum melongena L. J. Exp. Bot. 30:363–370; 1979.

    Article  CAS  Google Scholar 

  • McClelland, M.; Nelson, N. The effect of site-specific methylation on restriction endonuclease digestion. Nucl. Acids Res. 13:R201-R207; 1985.

    Article  PubMed  Google Scholar 

  • Momiyama, T.; Afele, J. C.; Saito, T.; Kavano, T.; Tabei, Y.; Takaiwa, F.; Takayanagi, K.; Nishimura, S. Differential display identities developmentally regulated genes during somatic embryogenesis in eggplant (Solanum melongena L.). Biochem. Biophys. Res. Commun. 213:376–382; 1995.

    Article  PubMed  CAS  Google Scholar 

  • Munksgaard, D.; Mattsson, O.; Okkels, F. T. Somatic embryo development in carrot is associated with an increased in levels of S-adenosylmethionine S-adenosylhomocysteine and DNA methylation. Physiol. Plant. 93:5–10; 1995.

    Article  CAS  Google Scholar 

  • Murashige, T.; Skoog, F. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15:473–497; 1962.

    Article  CAS  Google Scholar 

  • Rosenfield, C.-L.; Kiss, E.; Hrazdina, G. MdACS-2 (Accession No. U73815) and MdACS-3 (Accession No. U73816): two new 1-aminocyclopropane-1-carboxylate synthases in ripening apple fruit (PGR 96-122). Plant Physiol. 112:1735; 1996.

    Article  Google Scholar 

  • Smulders, M. J. M.; Rus-Kortekaas, W.; Vosman, B. Tissue culture-induced DNA methylation polymorphisms in repetitive DNA of tomato calli and regenerated plants. Theor. Appl. Genet. 91:1257–1264; 1995.

    Article  CAS  Google Scholar 

  • Thompson, J. D.; Gibson, T. J.; Plewniak, F.; Jeanmougin, F.; Higgins, D. G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24:4876–4882; 1997.

    Article  Google Scholar 

  • Thompson, J. D.; Higgins, D. G.; Gibson, T. J. CLUSTAL W.: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:4673–4680; 1994.

    Article  PubMed  CAS  Google Scholar 

  • Vergara, R.; Verde, F.; Pitto, L.; LoSchiavo, F.; Terzi, M. Reversible variations in the methylation pattern of carrot DNA during somatic embryogenesis. Plant Cell Rep. 8:697–700; 1990.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to István Nagy.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bucherna, N., Szabó, E., Heszky, L.E. et al. DNA methylation and gene expression differences during alternative in vitro morphogenetic processes in eggplant (Solanum melongena L.). In Vitro Cell.Dev.Biol.-Plant 37, 672–677 (2001). https://doi.org/10.1007/s11627-001-0117-8

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11627-001-0117-8

Key words

Navigation