Abstract
Introduction
The Mce proteins are encoded in a variable number of operons (from one to eight) in all Mycobacterium species. A role in the transport of host and mycobacterial lipids has been demonstrated for some Mce proteins in the pathogen Mycobacterium tuberculosis but little is known about these proteins in Mycobacterium smegmatis, a soil dweller species.
Objective
To investigate the role of Mce proteins in M. smegmatis.
Method
We used a non-targeted GC–MS approach to define the metabolic profiles of knockout mutants in mce operons of M. smegmatis. Metabolomic analysis was complemented with thin layer chromatography and transcriptional studies.
Result
We demonstrated that the lack of Mce4 proteins alters the primary carbon metabolism of M. smegmatis by reducing the content of fatty acids and increasing the accumulation of two stress-related compounds, glutamate/glutamine and triacyl glycerol (TAG). We also provide evidence supporting that the accumulation of TAG in a Δmce4 mutant depends on the bacterial redox state.
Conclusion
These results, together with the finding that the cell surface of the Δmce4 mutant is significantly altered, support a role for Mce4 in maintaining the cell wall lipids architecture of M. smegmatis, which, when altered, induces a redox imbalance that results in the accumulation of the stress-related compounds.
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References
Arruda, S., Bomfim, G., Knights, R., Huima-Byron, T., & Riley, L. W. (1993). Cloning of an M. tuberculosis DNA fragment associated with entry and survival inside cells [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, P.H.S.]. Science, 261(5127), 1454–1457.
Behrends, V., Williams, K. J., Jenkins, V. A., Robertson, B. D., & Bundy, J. G. (2012). Free glucosylglycerate is a novel marker of nitrogen stress in Mycobacterium smegmatis [Research Support, Non-U.S. Gov’t]. Journal of Proteome Research, 11(7), 3888–3896. doi:10.1021/pr300371b.
Beste, D. J., Espasa, M., Bonde, B., Kierzek, A. M., Stewart, G. R., & McFadden, J. (2009). The genetic requirements for fast and slow growth in mycobacteria [Research Support, Non-U.S. Gov’t]. PLoS One, 4(4), e5349. doi:10.1371/journal.pone.0005349.
Blanco, F. C., Soria, M., Bianco, M. V., & Bigi, F. (2012). Transcriptional response of peripheral blood mononuclear cells from cattle infected with Mycobacterium bovis [Research Support, Non-U.S. Gov’t]. PLoS One, 7(7), e41066. doi:10.1371/journal.pone.0041066.
Cantrell, S. A., Leavell, M. D., Marjanovic, O., Iavarone, A. T., Leary, J. A., & Riley, L. W. (2013). Free mycolic acid accumulation in the cell wall of the mce1 operon mutant strain of Mycobacterium tuberculosis [Research Support, N.I.H., Extramural]. Journal of Microbiology, 51(5), 619–626. doi:10.1007/s12275-013-3092-y.
Casali, N., & Riley, L. W. (2007). A phylogenomic analysis of the Actinomycetales mce operons [Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov’t]. BMC Genomics, 8, 60. doi:10.1186/1471-2164-8-60.
Cowley, S., Ko, M., Pick, N., Chow, R., Downing, K. J., Gordhan, B. G., et al. (2004). The Mycobacterium tuberculosis protein serine/threonine kinase PknG is linked to cellular glutamate/glutamine levels and is important for growth in vivo [Research Support, Non-U.S. Gov’t]. Molecular Microbiology, 52(6), 1691–1702. doi:10.1111/j.1365-2958.2004.04085.x.
Daniel, J., Deb, C., Dubey, V. S., Sirakova, T. D., Abomoelak, B., Morbidoni, H. R., et al. (2004). Induction of a novel class of diacylglycerol acyltransferases and triacylglycerol accumulation in Mycobacterium tuberculosis as it goes into a dormancy-like state in culture [Research Support, U.S. Gov’t, P.H.S.]. Journal of Bacteriology, 186(15), 5017–5030. doi:10.1128/JB.186.15.5017-5030.2004.
Dassa, E., & Schneider, E. (2001). The rise of a protein family: ATP-binding cassette systems [Editorial Review]. Research in Microbiology, 152(3–4), 203.
de la Paz Santangelo, M., Klepp, L., Nunez-Garcia, J., Blanco, F. C., Soria, M., Garcia-Pelayo, M. C., et al. (2009). Mce3R, a TetR-type transcriptional repressor, controls the expression of a regulon involved in lipid metabolism in Mycobacterium tuberculosis. Microbiology, 155(Pt 7), 2245–2255. doi:10.1099/mic.0.027086-0.
Dunphy, K. Y., Senaratne, R. H., Masuzawa, M., Kendall, L. V., & Riley, L. W. (2010). Attenuation of Mycobacterium tuberculosis functionally disrupted in a fatty acyl-coenzyme A synthetase gene fadD5 [Research Support, N.I.H., Extramural]. Journal of Infectious Diseases, 201(8), 1232–1239. doi:10.1086/651452.
Forrellad, M. A., McNeil, M., Santangelo Mde, L., Blanco, F. C., Garcia, E., Klepp, L. I., et al. (2014). Role of the Mce1 transporter in the lipid homeostasis of Mycobacterium tuberculosis [Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov’t]. Tuberculosis, 94(2), 170–177. doi:10.1016/j.tube.2013.12.005.
Gallant, J. L., Viljoen, A. J., van Helden, P. D., & Wiid, I. J. (2016). Glutamate dehydrogenase is required by Mycobacterium bovis BCG for resistance to cellular stress. PLoS One, 11(1), e0147706. doi:10.1371/journal.pone.0147706.
Garton, N. J., Waddell, S. J., Sherratt, A. L., Lee, S. M., Smith, R. J., Senner, C., et al. (2008). Cytological and transcript analyses reveal fat and lazy persister-like bacilli in tuberculous sputum [Research Support, Non-U.S. Gov’t]. PLoS Med, 5(4), e75. doi:10.1371/journal.pmed.0050075.
Gioffre, A., Infante, E., Aguilar, D., Santangelo, M. P., Klepp, L., Amadio, A., et al. (2005). Mutation in mce operons attenuates Mycobacterium tuberculosis virulence [Research Support, Non-U.S. Gov’t]. Microbes and Infection, 7(3), 325–334. doi:10.1016/j.micinf.2004.11.007.
Gouzy, A., Poquet, Y., & Neyrolles, O. (2014). Nitrogen metabolism in Mycobacterium tuberculosis physiology and virulence [Research Support, Non-U.S. Gov’t Review]. Nature Reviews Microbiology, 12(11), 729–737. doi:10.1038/nrmicro3349.
Haile, Y., Caugant, D. A., Bjune, G., & Wiker, H. G. (2002). Mycobacterium tuberculosis mammalian cell entry operon (mce) homologs in Mycobacterium other than tuberculosis (MOTT) [Research Support, Non-U.S. Gov’t]. FEMS Immunology and Medical Microbiology, 33(2), 125–132.
Harth, G., Maslesa-Galic, S., Tullius, M. V., & Horwitz, M. A. (2005). All four Mycobacterium tuberculosis glnA genes encode glutamine synthetase activities but only GlnA1 is abundantly expressed and essential for bacterial homeostasis [Research Support, N.I.H., Extramural]. Molecular Microbiology, 58(4), 1157–1172. doi:10.1111/j.1365-2958.2005.04899.x.
Joshi, S. M., Pandey, A. K., Capite, N., Fortune, S. M., Rubin, E. J., & Sassetti, C. M. (2006). Characterization of mycobacterial virulence genes through genetic interaction mapping [Research Support, N.I.H., Extramural]. Proceedings of the National Academy of Sciences USA, 103(31), 11760–11765. doi:10.1073/pnas.0603179103.
Kim, M. J., Wainwright, H. C., Locketz, M., Bekker, L. G., Walther, G. B., Dittrich, C., et al. (2010). Caseation of human tuberculosis granulomas correlates with elevated host lipid metabolism [Research Support, N.I.H., Extramural]. EMBO Molecular Medicine, 2(7), 258–274. doi:10.1002/emmm.201000079.
Klepp, L. I., Forrellad, M. A., Osella, A. V., Blanco, F. C., Stella, E. J., Bianco, M. V., et al. (2012). Impact of the deletion of the six mce operons in Mycobacterium smegmatis [Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov’t]. Microbes and Infection, 14(7–8), 590–599. doi:10.1016/j.micinf.2012.01.007.
Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., & Fernie, A. R. (2006). Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols, 1(1), 387–396. doi:10.1038/nprot.2006.59.
Pandey, A. K., & Sassetti, C. M. (2008). Mycobacterial persistence requires the utilization of host cholesterol [Research Support, N.I.H., Extramural]. Proceedings of the National Academy of Sciences USA, 105(11), 4376–4380. doi:10.1073/pnas.0711159105.
Pfaffl, M. W., Horgan, G. W., & Dempfle, L. (2002). Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR [Comparative Study]. Nucleic Acids Research, 30(9), e36.
Ramakers, C., Ruijter, J. M., Deprez, R. H., & Moorman, A. F. (2003). Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data [Research Support, Non-U.S. Gov’t]. Neuroscience Letters, 339(1), 62–66.
Santangelo, M. P., Goldstein, J., Alito, A., Gioffre, A., Caimi, K., Zabal, O., et al. (2002). Negative transcriptional regulation of the mce3 operon in Mycobacterium tuberculosis [Research Support, Non-U.S. Gov’t]. Microbiology, 148(Pt 10), 2997–3006.
Sassetti, C. M., & Rubin, E. J. (2003). Genetic requirements for mycobacterial survival during infection [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, P.H.S.]. Proceedings of the National Academy of Sciences USA, 100(22), 12989–12994. doi:10.1073/pnas.2134250100.
Shi, L., Sohaskey, C. D., Pfeiffer, C., Datta, P., Parks, M., McFadden, J., et al. (2010). Carbon flux rerouting during Mycobacterium tuberculosis growth arrest [Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. Molecular Microbiology, 78(5), 1199–1215. doi:10.1111/j.1365-2958.2010.07399.x.
Singh, A., Crossman, D. K., Mai, D., Guidry, L., Voskuil, M. I., Renfrow, M. B., et al. (2009). Mycobacterium tuberculosis WhiB3 maintains redox homeostasis by regulating virulence lipid anabolism to modulate macrophage response [Research Support, N.I.H., Extramural]. PLoS Pathogens, 5(8), e1000545. doi:10.1371/journal.ppat.1000545.
Sirakova, T. D., Dubey, V. S., Deb, C., Daniel, J., Korotkova, T. A., Abomoelak, B., et al. (2006). Identification of a diacylglycerol acyltransferase gene involved in accumulation of triacylglycerol in Mycobacterium tuberculosis under stress [Research Support, N.I.H., Extramural]. Microbiology, 152(Pt 9), 2717–2725. doi:10.1099/mic.0.28993-0.
Song, H., Sandie, R., Wang, Y., Andrade-Navarro, M. A., & Niederweis, M. (2008). Identification of outer membrane proteins of Mycobacterium tuberculosis [Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov’t]. Tuberculosis, 88(6), 526–544. doi:10.1016/j.tube.2008.02.004.
Stadthagen, G., Kordulakova, J., Griffin, R., Constant, P., Bottova, I., Barilone, N., et al. (2005). p-Hydroxybenzoic acid synthesis in Mycobacterium tuberculosis [Research Support, Non-U.S. Gov’t]. Journal of Biological Chemistry, 280(49), 40699–40706. doi:10.1074/jbc.M508332200.
Tripathi, D., Chandra, H., & Bhatnagar, R. (2013). Poly-L-glutamate/glutamine synthesis in the cell wall of Mycobacterium bovis is regulated in response to nitrogen availability [Research Support, Non-U.S. Gov’t]. BMC Microbiology, 13, 226. doi:10.1186/1471-2180-13-226.
Tullius, M. V., Harth, G., & Horwitz, M. A. (2003). Glutamine synthetase GlnA1 is essential for growth of Mycobacterium tuberculosis in human THP-1 macrophages and guinea pigs [Research Support, U.S. Gov’t, P.H.S.]. Infection and Immunity, 71(7), 3927–3936.
Acknowledgments
This work was funded by INTA Grant PNBIO1131034 and National Institutes of Health (NIH) Grants 1 R01 AI083084 and PAR08-130. MPS, FB, LK, MF and FB are CONICET fellows.
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María Paz, Santangelo; Adam, Heuberger; Federico, Blanco; Marina, Forrellad; Catalina, Taibo; Laura, Klepp; Julia, Sabio García; Pablo I., Nikel; Mary, Jackson and Fabiana, Bigi declare that they have no conflict of interest.
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Santangelo, M.P., Heuberger, A., Blanco, F. et al. Metabolic profile of Mycobacterium smegmatis reveals Mce4 proteins are relevant for cell wall lipid homeostasis. Metabolomics 12, 97 (2016). https://doi.org/10.1007/s11306-016-1035-4
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DOI: https://doi.org/10.1007/s11306-016-1035-4